Adelges cooleyi (spruce gall adelgid): 126833302
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Entry
126833302 CDS
T09500
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126833302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126833302
03041 Spliceosome [BR:
acoo03041
]
126833302
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126833302
Spliceosome [BR:
acoo03041
]
Complex B
Other components
Prp19-related factors
126833302
Complex C
126833302
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
RPN7
TPR_12
TPR_10
NRDE-2
Mad3_BUB1_I_2
DHR-2_Lobe_A
PPR
Motif
Other DBs
NCBI-GeneID:
126833302
NCBI-ProteinID:
XP_050420514
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MIDGENMVVDSNNYKSDAFIFQTYKLNKRDVEFEQDILRNPNSVKCWMRYIDNYKLGPYN
KVCVLYERALKQLPGSYKLWHNYLKIRRKYLKKIDNPDYEEINNVYERALVYMNKMPRIW
IEFCTFMVKQPKLTVARRLFDRALRALPITQHVRIWPLYLSFIKQNHDPEVAVKIYRRYL
KLFPEDAEDYIEYLTTSGRLDEAAVQLSEIVNNDSFVSKHGKSKHQLWNELCNLISKNPL
EIKSLNVDAIIRSGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFT
QVYDAYAQFEELSLQKRMEVVHSNQNSTEKDDREIDLRMARLENLIERRLLLLNSVLLRQ
NPHNVKEWLKRVQLYEGNDVQVINTFTEAVETVDPQKAVGRLHTVWVEFAKFYEKANQLE
EARLVFKKAVLVHYIKVEHLASVWCEWVEMELRHDNFNEAMKLMRQATAMPSRKVAYHDD
TETVQIRLHKSLKLWSLYLDMEESFGTVKSTMACYDRVIDLRIATPQTIINYGLFLEENK
YFEEMFKAYEKGVALFKWPNVFDIWNTYLTKFLDRYGGTKLERARDLFEECLEGCPPQFA
KCIFLLYAKLEEKHGLGRRAMAVYERATEAVLPEEKFEMFNIYIKKAAEISGIPKTREIY
MKALEVLSNNQARIMYQRFAELETKLGEIDRARAIYSHCSQICDPRVTEEFWQTWTNFEV
AHGNEDTLREMLRIKRSVQAMYNIQVNMMSAQMMSVINVEPEKSGMKLLEEKALETKEKT
LEPISFVLGSEQECLPKASVKNPDEIEFSDDDDDDNDGDDEEADGDKENEVKDKDLPTKK
EVPAELFGNLGAFTE
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgattgacggtgagaacatggttgtagacagtaataattataagtcagatgcatttata
tttcaaacttataaactgaataaaagggatgtagaattcgaacaagatatcttgagaaat
ccaaattccgtaaaatgttggatgaggtacattgacaactataaattgggaccttacaat
aaggtgtgtgtactttatgaacgtgcattaaaacaacttccaggcagttataaactatgg
cacaattacttgaaaattcgtcgcaagtatttaaaaaaaattgataatccagattatgaa
gagatcaacaatgtgtatgaaagagctttagtttatatgaataagatgcctcggatatgg
attgagttttgtacattcatggtaaaacagccaaaacttactgtggcgcggcgattattt
gatcgagcgctcagagcgttgcctatcacacaacatgttcgtatctggccattgtatttg
agttttattaaacaaaatcatgatcctgaagttgctgtcaaaatatataggaggtatttg
aaactttttccagaagatgccgaagattatattgagtatctgacaacctctggtaggctg
gacgaagctgctgttcaactgtccgaaatagtcaataatgatagttttgtctctaaacat
ggaaaatctaaacaccagctttggaatgagctatgtaatttaatttctaaaaatcctctt
gaaattaaatccttaaatgtagatgcgataattcgtagtggattaagacgttacactgat
caattaggtcatttatggaattcattggcagattattacatacgaagtggtttatttgaa
cgagccagagatatatatgaagaagcgattcaaacagttacaactgttcgtgattttaca
caagtgtatgatgcttatgctcaatttgaagaattaagtttacaaaaacgtatggaagtg
gtacactctaaccaaaacagtacggaaaaagacgatcgcgaaattgatttacgcatggct
agattggagaatttaattgaaagacgattgttacttttgaattccgttctgcttagacaa
aaccctcacaatgttaaagaatggctaaaacgtgtccagttatacgaaggcaatgatgta
caagtaataaatacatttacggaagctgtagaaacagtcgatccccaaaaagctgttggc
cgtttgcatacagtttgggtagaattcgctaaattttatgaaaaagctaatcaactagaa
gaagcacgattagtgttcaagaaagctgtgttggttcattatataaaagttgagcatctg
gctagtgtttggtgtgaatgggtagaaatggaattaagacatgataactttaatgaagca
atgaagttaatgagacaagccacggccatgccgtctcgcaaagttgcttatcacgacgat
acagaaactgtacaaatacgattgcataaatcattaaagttgtggtctttgtatctagat
atggaagaaagttttggaacggttaagtccacaatggcttgttatgatcgtgttattgat
ttacgaattgctactcctcaaactattattaactatgggttatttttggaggaaaataag
tattttgaagaaatgtttaaagcatacgaaaaaggagtagctttatttaaatggccaaat
gtttttgacatatggaatacatacttaacaaagtttttggatcgttatggtggaacaaaa
ttggaaagagctcgtgatttatttgaagaatgtttagaaggttgtcctccgcagtttgcc
aagtgcattttcctattgtatgccaaactcgaagagaaacatggtttaggcagacgagca
atggctgtctatgaaagggctaccgaagccgttctaccagaagagaagtttgaaatgttc
aatatatacattaaaaaagcagctgaaatatctggaatacctaaaaccagagaaatatat
atgaaagctctagaagttttaagtaataaccaagcgcgaatcatgtatcaaagatttgca
gaactcgaaacaaaattaggtgaaattgaccgtgcaagagctatttactcgcattgtagt
caaatatgtgaccctcgagtgactgaagaattttggcaaacctggactaattttgaagtt
gcacatggtaatgaagatacacttcgcgaaatgttgagaataaaacgaagtgttcaagca
atgtacaacattcaagtaaatatgatgtctgctcagatgatgtctgtaattaacgttgag
ccagaaaagagtggaatgaaattgttagaagaaaaggcattagaaaccaaagaaaaaact
ttagagcctatcagttttgttttgggtagtgaacaggaatgtcttcctaaagcatcagtg
aaaaatccagatgaaattgaattcagtgatgatgatgatgatgataatgatggtgatgac
gaagaagctgacggagataaagaaaatgaggtcaaagataaagatctacctactaaaaaa
gaagtaccagctgaactattcggcaatttaggagcatttactgaataa
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