Adelges cooleyi (spruce gall adelgid): 126833722
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Entry
126833722 CDS
T09500
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03013
Nucleocytoplasmic transport
acoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126833722
03015 mRNA surveillance pathway
126833722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126833722
Enzymes [BR:
acoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126833722
5.6.2.5 RNA 5'-3' helicase
126833722
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126833722
mRNA cycle factors
Common to processing body (P body) and stress granule
126833722
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
AAA_16
AAA_32
SRP54
Motif
Other DBs
NCBI-GeneID:
126833722
NCBI-ProteinID:
XP_050421188
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVDTYGPSSQTLTFLETEETDMIGADTQGTDFDFTDFTLPSQSQAPMSQLESSSHQMQL
LSNKGEKEDTNIITVTKKIGELQFEDEEEDSFFTKELPYYACKYCGIHDPGCVVMCNICK
KWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVKNVFVLGFIPAKA
DSVVILLCRQPCSTQNSLKDMNWDQEQWKPLIADRCFLTWLVKVPNETDQLRSRHVSATQ
IAKLEELWKDNNEATINDLDKPGVDEEPQIVLLRYEDGFQYQNVFGPLVKLEADYDKRLK
ESQTQENITVRWDVGLNKKTIAYFHLAKTDGDMRLMHGDELRLRLTGENPWAGIGHVIKI
PDNYGEDVGLELKINNGVPTDLTSNYVVDFIWKSTSFDRMQCSLKRFATDESSVSSYIYH
RLLGHEFDDLMFRSHMPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGTGKTVTSA
TIVYQLVKINGGPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSFLALHN
QVRKMSCNVELQKFQQLKDETGELSMADEKRYRALKKAAERELLKAADVICTTCVGAGDP
RLVRFKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQS
LFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADDRKLSKIEFPWPVAD
KPMLFYVTQGQEEIAGSGTSYLNRTEAANVEKIATRFLRCGVKPDQIGIITPYEGQRAYL
VQYMQYQAPLPAKVYQEIEIASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLNVAL
TRAKYGILIVGNPKVLSKQQLWNHLLNYYKANNVLVEGPLNNLKESLMQLSKPKQLVNAA
NPGSHFMNTHMYDAREALIPGSVYDRNSQGNVPNGHGPPQYFPRPGPGPVGLGLDLYARN
HDPLTFITPDTRSQPQIGGIPVGMVMNMNSMGPRFFNQQSVQNRQNVRNNRLPMTSGRLK
TKPNQKNLKSNGVGASPLSQAITQDVSQPYSQNMSQSMSQPGFSLSQPGLSQPELSQDSY
MMGEFHSQMDGLLSQDSTYQGDRTVTSFYNPPNTMYSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacacgtatggtccgagttcgcaaactctgacgtttttggagacagaagag
acggacatgataggtgcggacactcaaggtactgattttgactttaccgatttcacatta
ccgtcgcagagccaagcgccaatgtcacagttggaatcatcgtcgcatcaaatgcaatta
ttgagcaataaaggtgaaaaagaagatacaaatattataactgttactaagaaaattggt
gagttgcagtttgaagatgaagaggaagattcttttttcactaaggaacttccttactac
gcatgcaagtattgtggaattcacgatcctggctgtgtggtcatgtgtaacatatgtaaa
aagtggttttgcaatggacgtggaaacacatctggttcacacatcataaatcatttggta
cgagccaaacacaaggaagtaacattgcacaaagacggtccacttggtgagacggtgttg
gaatgctattcatgtggagtaaaaaatgtatttgtactgggttttattccggccaaagcc
gattcagtggttatacttttatgtagacagccgtgttcgacacaaaattcattgaaagat
atgaactgggatcaagagcaatggaaaccattgattgccgatcgttgttttctgacttgg
ttagtgaaagtaccaaatgaaactgatcagttgcgttccagacacgttagtgctactcaa
atagctaaactcgaagagctgtggaaagataataacgaagctacaatcaacgatcttgat
aaaccaggagtagacgaagaacctcaaatagtacttttgagatacgaggacgggtttcag
tatcaaaatgtgtttggaccgttagtaaaactggaagcagattatgataagcgattaaaa
gaatcgcaaacacaagagaacataaccgtccgttgggatgttggattgaataaaaaaaca
atcgcttattttcatctcgcaaagaccgacggtgatatgcgtttgatgcatggcgatgag
ttgagattacgattgacgggagaaaatccttgggccggtataggtcatgttattaaaata
cctgataattacggtgaagatgttggattagaattaaaaatcaataatggtgtacctaca
gatcttacatcaaattatgttgttgactttatatggaaatctacttcttttgatagaatg
caatgttcattaaaaagatttgctacggatgaatcttccgtatcgtcttacatttatcac
agattgcttggacacgagtttgacgatctcatgtttagatctcacatgcccaaacatttc
tctgccccaaacttaccagacttgaatagatcacaggtatacgctgtaaagcatgctgta
caaagaccgttgtctttgattcaaggaccacctggaaccggcaaaaccgtaacatccgcc
actatagtttaccaacttgtaaaaatcaatggagggcctgttttagtatgtgctccatct
aatatcgccgtggatcaattgactgagaaaattcacagaactggtttaaaggtggtacga
gtttgtgctaaatccagagaagcaatcgattctccggtttcatttttagctcttcataac
caagtccgaaagatgtcttgcaatgtagagcttcaaaagtttcaacagctcaaggacgaa
actggtgaattatcaatggctgacgaaaaacggtatcgtgctttgaaaaaagcagccgaa
agagaattacttaaagcagccgatgtcatttgtacaacatgtgttggagccggagaccca
cgtttggtacgatttaagtttcactctattctcattgatgaaagcatgcaggccacagaa
cctgagtgtatggtaccagttgtacttggtgtgaaacagttgatattagttggagatcat
tgccaacttggacctgtagttatgtgtaaaaaagccgctagagccggcttaagtcaatct
ttatttgaacgtttagttgtattgggcattcgaccatttagactggaagttcagtacaga
atgcatccggaactttcacgttttccatctaacttcttttatgaaggatcattacaaaat
ggagtttgtgctgatgatagaaaattgagcaagattgaatttccatggccagtggctgac
aaaccaatgttgttctatgtgacacaaggccaagaagagatcgctggatcaggtacttca
tatttgaatagaacagaagctgctaatgttgaaaagatagctactagatttttgaggtgt
ggcgtgaaacctgaccaaattggaattattacaccatacgaaggacaaagggcgtatttg
gtgcaatacatgcagtatcaagcacctcttccagccaaggtgtatcaagaaattgaaata
gctagcgttgatgcgtttcaaggacgtgaaaaggatttgattatcatgtcatgtgttcgg
tctaacgaacaccaaggaattggtttcctcaatgatccgagacgtttaaatgttgctttg
accagagcaaaatatggcatactgattgtgggaaatcccaaagttttatcaaaacaacaa
ctgtggaaccatttgttgaactactataaggcaaacaatgttttggtggaaggtcccctg
aataatttgaaggaatctctaatgcaattgtccaaacctaaacaattagtgaatgctgct
aatccaggatcacattttatgaacactcacatgtacgatgcccgtgaagctttaattcca
ggaagtgtttatgatcgtaatagtcagggaaatgtgcccaatggccatggaccaccacaa
tatttcccaagacctggacctggacctgttggattaggtttggatttgtatgctcgaaac
cacgacccattgacatttataactccggacacaaggtctcagccacaaattggaggtata
cccgttggtatggttatgaatatgaattctatgggacctcgatttttcaaccaacaatca
gttcaaaaccgccaaaatgtgcgaaacaaccgtttgccaatgactagtggtcgtttaaag
acaaaacccaatcaaaagaatctaaaatcaaatggagtcggtgcgtctccacttagtcaa
gcaattactcaagatgtttcacaaccgtatagtcaaaatatgtctcagagtatgtcccaa
ccgggattcagtctctctcagccaggtttgtctcaacctgagttatcgcaagacagttac
atgatgggcgagtttcattcacagatggatggcctactgtctcaagattcaacttatcaa
ggcgaccgtactgtcacatccttctacaacccaccaaatacaatgtactcgcagccatac
tga
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