Adelges cooleyi (spruce gall adelgid): 126836058
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Entry
126836058 CDS
T09500
Name
(RefSeq) cleavage and polyadenylation specificity factor 73 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126836058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoo03021
]
126836058
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126836058
Transcription machinery [BR:
acoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126836058
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126836058
U7-dependent histone pre-mRNA processing factors
126836058
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
126836058
NCBI-ProteinID:
XP_050424998
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MINIQDKKSEEFPISEEENDKLTITPLGAGQEVGRSCIVMEFKGKKIMMDCGIHPGLQGL
DALPFVDLIEANEIDLLLITHFHLDHSGALPWFLLKTKFKGKCYMTHATKAIYRWLLSDY
IKVSNIGTEQMLYTEADLEKSMDRIETINFHEEKDVGGIRFCAYNAGHVLGAAMFMIEIA
GVKVLYTGDFSRQEDRHLMAAEIPPTRPEILITESTYGTHIHENREEREQRFTMLVHDIV
NRGGRCLIPVFALGRAQELLLILDEYWGLHPELHDIPIYYASSLAKKCMSVYQTYINAMN
DRIKRQIAVNNPFVFKHITNLKSIDHFEDIGPCVVMASPGMMQSGLSRELFEMWCTDSKN
GVIIAGYVVQGTLAKTILSDPEDIMTMTGQKLPLKMSVDYISFSAHTDYQQTREFLNILK
PPHIVLVHGEQNEMQRLKSALVREYEENAEDIKVYNPRNTVGVDFYFTGEKTAKVMGTLA
VDKPVENKILSGVLLKRNFSYHIFAAEDIPRYSDMLLSEIQQKQVHRFTGSFTVLQNMLS
HLTGCIPEVIYPNKKLRVLNSVDISVDKNFATLEWITTPENDMYADIAVQVLMKIQTMNH
GDMKNITSVPFTEYDHMHFKECLIEILQEMFGEESVPKIFRGEKLFVAVDGKKANINLKT
LEVTCEDESLQRMVQAAVSKLHTTVTPLNKF
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgataaatattcaggataaaaagagtgaagaatttccaatatcagaggaagaaaatgac
aaacttacaattacgccacttggtgctggacaagaggttggtcgatcttgtatagtcatg
gagtttaaagggaaaaaaataatgatggactgtggtatccatccaggcctccaaggctta
gatgctttaccttttgttgatcttattgaagctaatgaaattgatttacttcttataact
cattttcacttggatcacagtggagcgctgccatggtttctattaaagactaaatttaag
ggaaaatgttatatgacacacgctaccaaagccatttatcgatggcttctttcggattat
atcaaagtcagcaacataggaactgagcaaatgctttatactgaagctgatttagaaaaa
agcatggaccgcattgaaactattaacttccatgaagaaaaagatgtcgggggaattcgt
ttttgtgcctacaatgcaggtcatgtgttaggtgctgcaatgtttatgattgaaattgct
ggtgtgaaagttttgtacactggagatttttcaagacaagaggatcgacacttaatggcc
gctgaaatcccacctacaagaccagaaatattaattactgaatctacatatggtacacat
attcatgaaaaccgtgaagaacgagaacagcgatttactatgctcgtacatgatattgtt
aatagaggaggaagatgtttaataccagtttttgcattaggaagagcacaagaacttttg
ttaattttagatgaatattggggtcttcatccagaactgcatgatattcctatttattat
gcatcatctctggctaagaaatgtatgtctgtgtatcagacttacattaacgcaatgaat
gatcgcatcaaaagacaaatagctgttaacaacccttttgtgtttaaacatatcactaat
ttgaaaagtatcgatcattttgaagatataggtccatgtgttgtgatggcatcaccgggt
atgatgcagagtggtttatctagagagctctttgaaatgtggtgtactgatagtaaaaat
ggtgttattattgctggttacgtagtgcaagggacactagccaaaactattctgtctgat
cctgaagatataatgacaatgactgggcaaaaattaccattaaaaatgtcagttgattat
atttctttttcagctcatacagattatcaacaaacacgagagtttttaaatattttaaaa
cccccacacattgttttagtacatggtgaacaaaatgaaatgcaaagattaaaatcagct
ttagttagagaatatgaagaaaatgcagaagatattaaagtctataaccccaggaataca
gttggagtagatttttatttcactggtgaaaaaacggcaaaagtaatgggaactttagct
gttgacaaaccagtagaaaataaaattttaagtggtgttttattaaaaagaaattttagt
taccatatatttgcagctgaagatataccaagatattcggacatgttattaagtgaaatc
caacaaaaacaagttcataggtttacaggatcatttactgtattgcaaaacatgttgtca
catttaactggatgcattcctgaagtaatatatcccaataaaaaattaagagtattgaac
tctgtggacatatcagtagataaaaattttgcaactctggaatggattactacacctgaa
aatgacatgtatgctgatatagctgttcaagtattaatgaaaatccaaacaatgaatcat
ggtgatatgaaaaatattacatcagttccatttacagagtatgaccatatgcattttaag
gaatgtttaattgaaattttacaagaaatgtttggtgaagaatcggttcctaaaatattt
agaggtgaaaaattgtttgtagctgttgatggaaagaaggcaaatattaatttgaaaact
ttggaggtcacttgtgaagatgaaagtttgcaaagaatggttcaagctgctgtatctaaa
ctacacactacagtaacacctttaaataaattttaa
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