Adelges cooleyi (spruce gall adelgid): 126837465
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Entry
126837465 CDS
T09500
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03020
RNA polymerase
acoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126837465
09124 Replication and repair
03420 Nucleotide excision repair
126837465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoo03021
]
126837465
03400 DNA repair and recombination proteins [BR:
acoo03400
]
126837465
Enzymes [BR:
acoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126837465
Transcription machinery [BR:
acoo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126837465
DNA repair and recombination proteins [BR:
acoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126837465
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Tom7
Motif
Other DBs
NCBI-GeneID:
126837465
NCBI-ProteinID:
XP_050427332
LinkDB
All DBs
Position
Unknown
AA seq
1864 aa
AA seq
DB search
MAASDSKAPLRTVKRVQFGILSPDECRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVI
DRFSRCQTCAGNMTECCGHFGHIELAKPVFHIGFIPKVIKILRCVCFYCSKLLVSPTHPK
VKEIVMKSKGQPRKRLVFVYDLCKGKNICEGGDELDINKENDPNLPPKKQGHGGCGRYQP
NIRRAGLDLTAEWKHVNEDSQEKKIPLTAERVHEILKHITDEEVVIMGMDPRFARPDWMV
LTVLPVPPLPVRPAIVMFGSARNQDDLTHKLADIIKCNNELIRNEQSGAATHIISENIKM
LQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDEVGVPRSIAQNMTFPEIVTPFNIDHMLELVRRGNSQYPGAKYIIRDNGERIDL
RFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRKMT
KRDVFLEKEQMMNLLMHLPIWDGKMPTPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTH
PDDEDNGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFY
GNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMDLEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLCGEAVEFQSIATI
EPSHKKFEAEFRFDASNERHMRKIFTEDVLKDLLGSNDTVAELEKEWEQLNTDRDTLREI
FPSGESKVVLPCNLKRMIWNVQKIFHINKRGPTDLNPVKVLNGVKELLDKCIIVAGQDQL
SRQANQNATLLFQCLVRSTLCTKSVSEKFRLSSEAFEWLVGEIENRFKQAQAAPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLILRIRIMNGEDGKM
NGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKRIIITDTGE
FKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLN
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKAKDGIEIPMDAGYMGIGGGGMFMGAGTP
SMSPAMTPWDHTNTPLYQNSWSSTMTPGGPGFSPAGSSETGGTSPYWMTSGGTPGSPGSP
GLATSPYVPSPSSMSPNYTYPSSPQFGAMSPSMTPTNYSPTSPQYTANLQNTPKYSSMSP
NYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP
TSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQ
YAASSPSYTPSGGSNSSNYKYSPTTPSLAVSPTYSPTSPMYSPSSASYSPSSLQRGASGS
GNAQYNQSYSPSSPVYSPTNFPVTSPRYSPTSPTYSPAVGSPTYSPSSPSYSPTSPNFSG
PDEH
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagcgattccaaagcgccgcttcggacggtcaaaagggtgcaattcggcatt
ttgtctccggacgaatgtcgccgaatgtcggtcaccgaaggaggtatccggttttcggag
acgatggaaggcggtcgtccaaaactcggaggattgatggaccccagacaaggagttatc
gatcgcttttcaagatgtcagacgtgtgcaggtaatatgactgagtgttgcggtcatttc
ggtcatatcgaactggccaaacctgtgtttcacatcggtttcatccccaaagtgataaaa
atattacgttgcgtttgtttctactgttcgaaacttctggtcagccccactcatcctaaa
gtcaaagagatcgtgatgaaatccaaagggcagccgagaaaacgtttggtgtttgtgtac
gatttgtgtaaaggaaaaaatatatgcgaaggaggcgacgagttggacataaacaaagag
aacgatcccaatttgccaccgaagaaacaaggtcacggcggttgcggtcggtaccaaccg
aacattcgacgtgccggcctggaccttacggccgaatggaagcacgtcaacgaagattct
caagagaagaaaataccgttgacggcggaacgggtgcacgaaatcctgaaacacattacc
gacgaagaggtggtcatcatgggaatggacccgagattcgccagacccgattggatggtg
ctcaccgtgttgccggtgcctccgttgcccgtccgaccggcgatcgtcatgttcggatcg
gccagaaatcaagacgatctaacccataagttggcggacataataaaatgtaacaacgaa
ttaatccgcaacgaacaatctggcgccgccactcacattatatctgaaaatataaaaatg
ctgcaattccacgtggctacattggtcgacaacgatatgcccggactgccgagggccatg
caaaagtccggtaaacctttgaaagcgatcaaagcgcgtttgaagggcaaagaaggcagg
atccgaggcaacttgatggggaagcgcgtggacttctcggcccgtaccgtcatcacgccg
gatccgaatttgcgtatcgacgaggtcggcgttccccgttcgatcgctcagaacatgacg
tttccggaaattgtcactccgttcaacattgaccacatgctcgagttggtgcgacgcggc
aattcccagtatcccggagccaagtacattatacgcgacaacggcgaacgaatcgactta
cgctttcatcccaaaccgtcggacctccatttgcagtgcggctacaaagtcgaaagacac
attaaggacggcgatctggtggtgttcaacagacagccgacgttgcacaaaatgagtatg
atgggtcatcgtgtccgcgtgttgccgtggtctacgttccgtatgaacttaagttgtacg
tcgccttacaacgccgatttcgacggcgacgagatgaatcttcacgtgccgcagtctatg
gaaacgagagccgaagtagaaaacatccatatcactccgagacagatcattacgccgcaa
gcgaacaaacccgtcatgggcatcgtacaggacacgctgacggctatcaggaaaatgacc
aagagagacgttttcctcgagaaggaacaaatgatgaacttgctgatgcacttgcccata
tgggacgggaaaatgcctacgccttgtatattgaaacccaaaccgctgtggacgggcaaa
cagttgttctcgttgatcattcccggcaacgttaacatgatacgcacgcattccacgcat
ccggacgacgaagacaacggaccgtacaaatggatatcccctggagatacaaaggtaatg
gtggaacacggtgaactggtaatgggaatattgtgtaaaaagactttgggtacgtcggcc
ggctcgttgcttcatatatgtatgttggaacttggacacgaggtgtgcggtcggttctac
ggtaacatccagaccgtggtcaacaattggctgttgtacgaaggtcattccatcggtatc
ggtgacactattgccgatccgcagacgtatttggaaatccaaaaggccatcaagaaagcc
aaagaagacgttatcgaggtgatacaaaaggcgcacaacatggacctggagccgacgccc
ggcaacacgttgcgtcagactttcgaaaaccaagtgaaccggattttgaacgatgcccgt
gacaagaccggaggttctgcgaaaaaatccctcacggagtacaacaatctcaaggctatg
gtcgtgtccgggtccaagggatcgaacattaacatttctcaggttatcgcttgcgtggga
caacaaaacgtcgaaggtaaacgcataccgttcggtttccgcaaacgtacgttgccgcat
ttcatcaaagacgattacggtcccgagtccagagggttcgtggagaattcttacctggcc
ggtttgacaccgtccgaattctatttccacgccatgggaggtcgcgaaggtctcatcgat
accgccgtgaaaaccgcagaaaccggttacatccagagacgtttgatcaaggccatggag
tccgtgatggtccattacgacggcaccatccgcaactcggtcggccagctgatccagctg
cgttacggcgaagacggtctgtgcggcgaggccgtggagttccagagcatcgccaccatc
gagccgtcgcacaagaaattcgaggccgagttcaggttcgacgcgtccaacgagaggcac
atgcggaagatattcaccgaggacgtgctcaaggacctgttgggcagcaacgacacggtg
gccgagttggaaaaggaatgggaacagctgaacaccgaccgggacacgctgcgggagatc
ttcccgtcgggcgagagcaaagtggtgttgccgtgcaatctcaaacgcatgatatggaac
gtgcagaagattttccacatcaacaaacggggcccgaccgatttgaaccccgtcaaagtg
ttgaacggcgtcaaagagttgttggacaaatgcattatcgtggccggccaggaccagctg
agcagacaggccaatcaaaacgccacgttactgttccaatgtttggtacggtccaccctg
tgcaccaagtcggtgtcggagaagttccgtttgtcttcggaagcgttcgaatggttggtc
ggtgaaatcgaaaacagatttaaacaagctcaggctgcccccggagaaatggtcggagcg
ttggccgctcagagtctaggagaaccggccactcagatgacgttgaacactttccatttc
gccggtgtgtcttcgaagaacgtaacgctcggtgtgcccaggttgaaggaaatcatcaac
ataagtaaaaaaccaaaggccccttcgctgaccgtgttcttgacgggtgccgcggctagg
gacgcggagaaagcgaaaaatgtcctctgccgtctggaacacacgacgctcaggaaagtc
acggcaaacacggccatctactacgatccagatccgcaaaacacggtgatccgggaagat
caagagtttgtcaacgtctactacgagatgccggatttcgatccgaccagaatctctccg
tggttgttgcgtatcgagttggaccgcaaaagaatgaccgataaaaaattgactatggaa
gcgatatccgaaaagatcaacgccggctttggcgacgatctcaattgtattttcaacgat
gacaacgccgagaagttgatcttgcgcatacgcataatgaacggcgaggacggcaaaatg
aacggaggcgacgacgaagacacggtggacaaaatggaagacgacatgttcctcaggtgt
atcgaagcgaacatgttgtccgacatgaccctgcaaggtatagaagcaatatcgaaagtg
tacatgcatttgcctcagacagactctaagaagagaataatcatcacggacacgggtgaa
ttcaaagccatcgccgattggttactggaaaccgacggcactagcttgatgaaagtcttg
agcgaaagggatgtggatcccgtgagaacgttttccaacgatatttgtgaaatattctcc
gtgctgggcatagaagccgtgcgtaagtctgtggaaaaagaaatgaacaccgtgttgaat
ttctacggactgtacgtaaactatcggcatttggctttgctgtgtgacgtgatgacggcc
aaaggtcatttgatggccatcactcggcacggtatcaacagacaagacaccggagcgttg
atgagatgttctttcgaagaaactgtcgacgttttgttagatgccgcttcgcacgccgag
gtcgatccaatgagaggtgtatcggaaaacattattatgggacaattgcccaggatggga
acaggttgtttcgatttgctgttggacgccgagaaagccaaggacggtatagaaataccg
atggacgccggttacatgggcatcggcggtggcggtatgttcatgggagcaggtacgcct
tcgatgtctccggccatgactccgtgggatcatacgaacactccgctctatcaaaacagt
tggtcgtcgaccatgactcccggaggtcccggtttctctccggccggatccagcgaaacc
ggcggcacgtccccgtactggatgaccagcggcggcactccgggcagcccgggatcgcca
ggcctggccaccagcccgtacgtgcccagccccagctccatgtcgcccaactacacttac
ccgtcgagccctcagttcggtgccatgtcgccgtcgatgacgccgaccaattactcgccg
accagcccacagtacacggccaatctgcagaacacacccaagtactcttcgatgtcgccc
aattataattattccccgaccagtccttcgtattcgccaacgagtccgtcttactcgcac
acttcatactcaccgaccagcccttcatacagtccgacgtcgccgtcgtacagccccacg
tcgccttcgtacagtccgacgtcgccggcttacagtcctacgtctccatcgtacagcccc
acgtctccgtcgtacagtcctacgtcgccgtcgtacagcccgaccagcccagcgtacagc
cctacgtcgccgtcttatagcccgacctctccatcgtacagtccgacgtctccgtcgtac
agcccgacttcgccgtcgtacagtcccacgtcgccgtcgtacagtccgagctctccgcag
tacgcggcttcttcgccgtcgtacactcccagcggcggatccaacagtagcaattacaag
tattcgccgaccacgccgtccctggcggtcagtccgacttactctccgaccagtccgatg
tattcgccgtcgagcgcttcgtactcgccgtcttcactgcaacgcggcgcttccggatcg
ggcaacgcgcaatacaatcagtcgtacagcccgagctctccggtgtactcgccgacgaat
ttcccggtgaccagtccaaggtattctccgacgtctcctacgtactctccggcggtcggc
agcccgacttactcgccttcgtcgcccagctattcgccgacgtcgcccaacttcagcggc
ccggacgaacattaa
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integrated database retrieval system
