Adelges cooleyi (spruce gall adelgid): 126838136
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Entry
126838136 CDS
T09500
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126838136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126838136
Enzymes [BR:
acoo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
126838136
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126838136
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
DUF7430
Motif
Other DBs
NCBI-GeneID:
126838136
NCBI-ProteinID:
XP_050428248
LinkDB
All DBs
Position
Unknown
AA seq
534 aa
AA seq
DB search
MSEITSENFFSELPIIETKLKDSAFVCFDLEFSKLNDEKHAPFTFFDTLEERYHKLHLKV
SDITCIQLGLSFFVYDAHDKVFQVSSYSFYTFPKTYLKYDGIIKFQTSCVEFLCKHNFNF
NKLFNNGISYLTDEQENQMKLEMADDSFSDSYLKKSKYRIINEEMCHQLKIVTEWYENAI
DGDNISVKKLKSNDPVFTYLLQYHIMNKCEHVCLQEDLHTINIIKITSKDEKSNTLNAKN
NEASKQILFKKMLGIKHLLNLLSETKKPLVGHNCAMDILILCNQFYNPLPDTFKEYKSFL
SNKFGPIYDTKLMCKTFRKLLPKNVNWDGSSLSEIYTFLKDGDAKIYSDALFIQPSIVEE
RNEMKLHHAGWDAYYTGYCFVKIIHITKNFSSKTENVNRRYTLTELLKSVDLLKNKMFTS
RLLTNCIDLEADDNNVLPECLIIKSKGLFPKSLKLSKLKIDMHQIICNYDMRLISNSAVL
IGLPVINNRIISEIKSKYTVEKYSKYKDKKKKQYLSLSIITLSCVAIALFCLRK
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagataacttcagaaaattttttttctgaattgcctattattgaaaccaaatta
aaagattcagcatttgtatgttttgatttagaattctctaaattgaacgacgaaaagcat
gctccattcacattttttgacacccttgaagaacgatatcataaattacatttaaaagta
tctgatattacttgtatacaactcgggctatctttttttgtatatgatgcacacgataaa
gtatttcaagtcagctcttattcattctacacattccctaaaacttatttaaaatatgat
ggtataatcaagttccaaacatcatgtgttgaattcttatgcaagcataactttaatttt
aataagttatttaacaatggtatatcctacttgactgacgaacaagaaaaccaaatgaag
ttggaaatggcagatgattcgttttcagacagttatttaaaaaaatcaaaatatcgtata
attaatgaagaaatgtgtcatcaattaaaaattgttactgaatggtatgaaaatgcaatt
gatggagataatatatcagtaaagaaattgaaaagcaatgatccagtttttacatattta
ctccaataccatatcatgaacaaatgtgaacatgtgtgcttacaagaggatcttcatact
attaatataataaaaataaccagtaaagatgaaaagtccaacacattaaatgctaaaaac
aatgaagcctctaaacaaatattatttaaaaaaatgttaggtatcaaacatttattaaat
ttactatcagaaacaaaaaaaccattagttggtcataattgtgctatggatatattaata
ttgtgcaaccaattttataatccattacctgataccttcaaagaatataaatcttttctt
tctaacaaatttggaccaatttatgacacaaagcttatgtgcaaaacatttagaaagtta
ttgccaaaaaacgttaactgggatggaagttctctttctgagatttatacatttttaaaa
gatggagatgcaaaaatatactccgatgcactttttatccaaccatctattgttgaagag
agaaatgaaatgaaattgcatcatgcaggttgggatgcatattacactggatattgtttt
gtcaaaatcattcatattactaaaaatttttctagtaaaacggaaaatgttaatcgaaga
tacactctaactgaacttttaaaatccgtagatttactaaaaaacaaaatgttcactagc
aggttattaacaaattgcattgatttagaagctgatgataataatgtcttaccggaatgt
ctaataattaaatcaaaagggttatttccgaaatcgttaaaattgagtaaattgaaaatt
gatatgcatcaaataatatgtaactatgatatgagattgatttcaaattctgcagtactt
ataggcttacctgtcataaataatagaattataagcgaaatcaaatctaagtacacagtt
gaaaaatattccaagtacaaagacaaaaagaaaaaacaatatttaagtttaagtataata
actttatcatgtgtggccattgcgttattttgcttgagaaaatag
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