Adelges cooleyi (spruce gall adelgid): 126839306
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Entry
126839306 CDS
T09500
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03008
Ribosome biogenesis in eukaryotes
acoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126839306
09123 Folding, sorting and degradation
03018 RNA degradation
126839306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126839306
03009 Ribosome biogenesis [BR:
acoo03009
]
126839306
03016 Transfer RNA biogenesis [BR:
acoo03016
]
126839306
03036 Chromosome and associated proteins [BR:
acoo03036
]
126839306
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
126839306
mRNA degradation factors
5'-3' decay
5' exonucleases
126839306
Ribosome biogenesis [BR:
acoo03009
]
Eukaryotic type
Pre-60S particles
RNases
126839306
Transfer RNA biogenesis [BR:
acoo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
126839306
Chromosome and associated proteins [BR:
acoo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
126839306
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
PT
Ribosomal_S2
Motif
Other DBs
NCBI-GeneID:
126839306
NCBI-ProteinID:
XP_050430512
LinkDB
All DBs
Position
Unknown
AA seq
1714 aa
AA seq
DB search
MGVPKFFRYMSERYPCLSELVKDYQIPEFDNLYLDMNGIIHTCSHPNDDDPHFRITEETI
IKNIFHYLEVLFQMIQPQKLFFMAVDGVAPRAKMNQQRGRRFRSAHTAAEQMKAAVARGE
VLPSTDRFDSNCITPGTEFMVRLQNELEYFVNDKISNDPLWKKVQVILSGHQVPGEGEHK
IMDYIRYMKSCPGYDSNTRHCLYGLDADLIMLGLCTHEPYFSLLREEVKFGRKTKRETSV
DETKFFLLHLSLMRDYLNLEFQALKETLPFKYDLESIIDDWVLMGFLVGNDFIPHLPELH
ISKGALPILYKVYMDVLPQVGGYLNEKGSLNLKRFEKFMVTLANFDYDQFRETFADVKFL
EGKRTTVNGNEASDEIEPVYKDELAALIKDTNNTLLSDDEEELTETEEEAMMAEFTLHKE
NYYRCKLEYNVITDDVMRSQAEGYIRAIQWNLNYYYNGCCSWSWYYPHHYAPYISDIRGF
ENLKINFDLGQPFLPFQQLLAVLPSLSKELLPKPFQDLMTEEASPIRIYYPEEFETDLNG
KQHEWEAVVLIPFIDEETLLKAMKLVEQKLSEDEKKRNMHGPMHLFKYTPENLGGSQNSK
YFPSIEESHALKICIKREDIAVSSDKLVKGLCSDVQLNVYHIGFPSLHLMPITAELQKRN
VKVFQSPSLGENMIIKILTKDEQNEDDIRTIAKDLIGKSIYVNWPHLEELKITSIFNKTV
RFSLDNEKVNVQDMDESAKQEFKLLSQGLAKSYITTRGIEIGNTNLLVRGQLLSGTKYIP
RQDGSGVDLVKMWADIPTTIAYQTALPGLEVNDPRTKESYLALEEYFPIGSTVFVLSAPY
YGCQANVVGGYVSSRIKVELTLTPEPYYNDLLDRICAIETKFHYGHVAADKLSISTYMLA
KITGTIFLMVETNEDKHEKKLNIGMNLKYNKRNEEVVEYTKKIENTWLYSKKTIELLDQY
ITRFPELTFLLSSQDSIKDTYRLEELFPDSRTRKEKLEELKSWIGEMRLLTKNKQPCGSM
EPSKVVEIEKYMDEFLEINSKNQKTLTFSHKSQNLFKPVTKLDKLKADEGAEIRIFDRVV
CIRSSYQVPLGYKGTVVSISKSHIDTEVVYGVVFDKEFPNGISLGGSPNRGYKLSRMSFI
NLSHAIRKGLYKPLVVKSQTNKNQYPDIQKLPVENTWENIWEHLRLNPEKPEKTQKNSEN
IIKLAPLDSWRQQRPCKEPVPHPNNMTQKQAVTAEPKRNGQYYYNSKLNNGTLSNEEACD
STTLILKKMLKIQPEENVIKQPTQILNVRKMNKNNHSIATRNPQAKPTKGGFKSVESNDN
MSHRTVIDKVLPVQGVQEPPASMTIALEKFYTTKGYGKPKYSITNVGDKNVKMYNASVLL
PNGITVPGEVKHTCDEAIEDVASRALIIVQQTEENKNKLKQMNLNNHPPNVTQNVVRQQG
LHPQVPQQQGASNVYMNWISSYQHRAPYQQPFPQQQSVQYFDRPPISFQQFQPQQYPAQY
TSAYQMPRQSFPPPWMQPAMQPAMQPSMQPAMQPTMQSAMQPAMQPAMQPAMQPAMQPAM
QPAMQPAMQPGMQPGMQPGMQPGMQPAMQPAMQPTYNQQFYNYQQDMQYPKSVPTVFTNL
VNASQLPQPPVHWQAPPRNAVHNEVSQHPYPSQASSINRQSCTQTTAKDIPLNDPHSPSN
RVMIPSPSSAFKSAGSTGKRKIRVAANFNTPKQK
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgggagttcctaaattctttcgctatatgagcgaacgatatccttgtctaagcgaacta
gtcaaagactaccagattccagaatttgataatttatacttggatatgaatggtatcatt
catacttgttcacatccaaatgacgatgatcctcatttccgtattactgaagagactata
attaaaaacatatttcattatttagaagtattatttcaaatgatacaacctcaaaagtta
ttttttatggcagtcgatggcgtagcacctcgtgctaaaatgaatcagcagcgtggtcgt
cgttttcgttcagcacatacagcagctgaacagatgaaagctgctgttgcaaggggtgaa
gtattaccgtcaacagatcgcttcgactcaaattgtataacaccaggaacagagttcatg
gtgcgtttgcaaaatgaacttgaatattttgtcaatgataagatatccaacgatcccttg
tggaaaaaagtccaggtcatcctttctggtcatcaggttcccggcgaaggtgaacacaaa
attatggactacataaggtatatgaagtcatgtccgggatacgattcaaatacaagacat
tgtctgtatggtttggatgcagatttaattatgttaggtttatgtacacacgaaccatac
ttctcattgcttagagaagaagtcaaatttggtcgcaaaactaaaagagagacatctgtt
gatgaaacaaaattttttttattacatttgtcattgatgagagactacttaaatttagag
tttcaggctcttaaagagactctaccctttaaatatgatttagaatctattattgatgat
tgggttttaatgggctttttagtaggtaatgattttatacctcacttgccagaattgcat
atctctaaaggagctttacctattttgtataaagtatacatggatgttctgccacaagta
ggaggatatttaaatgaaaagggttctttaaatcttaaaagatttgaaaaattcatggta
actttagcaaattttgactatgatcagtttcgtgaaacttttgccgatgtgaaatttttg
gaaggaaaacgaactactgttaatggaaatgaagcaagtgacgaaattgaaccggtttac
aaagatgagctagcagctttaataaaagatacgaataatacacttttaagtgatgacgaa
gaagaactgactgaaactgaagaagaagccatgatggcagagtttacattacataaagaa
aactattatagatgcaaactagagtacaatgttattacagatgatgttatgagatctcaa
gccgaaggatatatacgtgccatacaatggaatttaaactattattacaatggttgctgt
tcgtggtcttggtattatcctcatcattatgctccatatatatcggacataagaggcttt
gaaaatcttaaaataaattttgatcttggacagccgtttttaccatttcaacagctattg
gctgtactaccgtcgctcagcaaagagttattacctaaaccttttcaagaccttatgact
gaagaagctagtccaatcagaatatattatccagaagaatttgaaactgatctcaatggc
aagcagcatgaatgggaagctgttgtactcattcctttcattgacgaagaaactctgttg
aaagctatgaaattggttgaacaaaaattatcggaagacgaaaagaaaagaaacatgcat
ggtcctatgcatctcttcaaatatactccggagaatttgggcgggtctcaaaactctaaa
tatttcccttctattgaagaaagccacgcgttaaaaatatgtattaaacgtgaagatatt
gcagtaagttctgataaacttgttaaaggtttgtgttcagacgtacaactaaatgtgtac
catattgggtttccatcgcttcatctcatgccaattacagcggagttacaaaagcgcaat
gttaaagtgtttcaatccccgagtctgggtgaaaatatgattattaaaatattaactaag
gatgagcaaaatgaagatgacatacgaactattgctaaagacctgattggaaaatcgatt
tacgtgaattggccgcatcttgaagaactaaaaattacaagtatttttaataaaacagta
cgtttttcacttgataatgaaaaagtaaatgtacaagatatggacgaatctgctaaacaa
gaatttaaattactttcgcagggacttgccaaatcgtatataaccacacgtggtattgaa
attggtaataccaatctcctcgttcgtggtcagttattaagtggaactaagtatatacca
agacaagatggtagtggtgttgacttagtgaaaatgtgggctgatattccaacaacgata
gcttatcaaacggccctgcccggtttggaagtaaatgatccacgtaccaaagagagttat
cttgctcttgaagaatactttcctattggaagtactgtatttgtgcttagtgcaccatac
tatggttgtcaggctaatgtggtcggaggatatgtatcttcgagaattaaggttgagctg
acacttacacctgaaccgtattacaatgatttattagatagaatttgtgctatcgaaact
aaatttcattatggtcatgtggctgcagacaaactatcaataagcacttacatgctggca
aaaatcacaggaacaatatttttaatggttgaaaccaatgaggataaacatgaaaaaaaa
ctcaatattggaatgaatctcaaatacaataagcgaaacgaagaagtggttgaatatact
aaaaaaattgaaaatacttggttgtattctaaaaaaaccatagagttattagatcaatac
attacacgtttcccagaattgacttttttattgtcgagccaagatagcataaaggatacg
tacagattagaagaattatttccagattcaagaacaaggaaagagaagttggaagaacta
aaaagttggattggagaaatgcgtttattgactaaaaataaacagccatgtggttctatg
gaaccaagcaaagtagtcgagattgaaaagtatatggatgagtttctggaaataaattct
aagaaccaaaaaactttgactttcagccacaaatcccaaaatctttttaaaccagtgact
aagctagacaaattgaaagctgatgagggtgcagaaatacgaatttttgaccgcgtggtg
tgtataaggtcatcatatcaggttcctcttggctataagggaacagtagttagtatttct
aaatcgcatatcgataccgaggttgtttacggtgtagtattcgacaaagagtttcctaat
ggaatatctttgggcggcagtcctaatcgaggatacaaacttagtagaatgtctttcatt
aacttgtcacatgcaattcgtaaaggactttacaaaccattagtcgttaaatcacaaacg
aacaaaaatcaatatccagatatacagaaattgccagtggaaaatacatgggaaaacatt
tgggaacacttgcggttaaatcctgaaaaaccggaaaagacacaaaagaatagtgagaat
ataataaaattggctccattggattcttggcgacaacaacgaccgtgcaaagaaccagta
ccacatcctaacaacatgactcaaaagcaagcagtgactgcggaaccaaagagaaatggt
caatattattataatagcaagttaaacaatggtactctatcgaatgaagaggcatgtgac
tctacaacattaattctaaagaaaatgttaaaaattcaacccgaggagaatgtaataaaa
cagccgactcaaatattaaatgtaagaaaaatgaataaaaataaccattccattgctact
agaaatcctcaagcgaaaccaacgaagggtggtttcaaaagtgtggagtctaatgacaat
atgtcgcacagaaccgtaattgataaggttttgcccgtacaaggtgttcaagaacctcct
gcttcaatgactattgctttggagaaattttacactactaaaggttatggcaagcctaag
tatagtattactaatgttggagataaaaatgtgaaaatgtataatgcctccgttttatta
ccaaacggcatcacagtgcctggagaagtaaaacatacatgtgatgaagctattgaagat
gtagcttctcgcgcgttgataattgttcaacagacagaggagaacaaaaataaattgaag
caaatgaatctaaataatcatccgccaaatgtcactcaaaatgtagtacgacaacaagga
ttgcacccacaagtgccgcaacaacaaggtgcttccaatgtatacatgaattggatatca
tcgtatcagcatcgggcaccgtaccaacaaccttttcctcaacaacagtcagttcagtat
ttcgatagacctccaatttcatttcagcaatttcagccccagcagtatccagctcaatac
acgtccgcttatcaaatgcccagacagtcttttcctcccccatggatgcaacccgccatg
caacctgccatgcaaccctccatgcaaccggccatgcaacccaccatgcaatcggccatg
caacccgctatgcagccggccatgcaacccgctatgcaacccgctatgcaaccggctatg
caaccagccatgcaacccgctatgcaacccggtatgcaacccggcatgcaacccggcatg
caacccggcatgcaacccgctatgcaaccggccatgcaacctacttataaccaacagttt
tataactatcagcaagacatgcagtatcctaagtcagtacctacagtttttactaattta
gtaaatgcttcgcagttgcctcagcctccagtgcactggcaagcacctcctagaaatgca
gttcacaatgaagtgtcacagcacccatatccgtctcaagcatcatcaataaatcgtcag
agttgtacacagacaactgcaaaggatattccattgaacgatcctcattcacccagcaac
cgggttatgattcctagtccgtctagtgcatttaaatcggctggtagcactggtaaacgt
aaaattagggtagctgctaacttcaatactcctaaacaaaaataa
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integrated database retrieval system
