Adelges cooleyi (spruce gall adelgid): 126840581
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Entry
126840581 CDS
T09500
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126840581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acoo03041
]
126840581
03009 Ribosome biogenesis [BR:
acoo03009
]
126840581
Enzymes [BR:
acoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126840581
Spliceosome [BR:
acoo03041
]
Complex A
U2 snRNP components
U2 related factors
126840581
Complex B
126840581
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
126840581
Ribosome biogenesis [BR:
acoo03009
]
Eukaryotic type
90S particles
Helicases
126840581
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
nSTAND3
AAA_22
AAA_19
SRP54
ABC_tran
Flavi_DEAD
ResIII
Microtub_bd
TsaE
AAA_7
Myosin_head
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
126840581
NCBI-ProteinID:
XP_050432387
EnsemblRapid:
LOC126840581
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MSKRRLDIIDPYITKNKKAEGQVYIKPSTSAQLQTNPYTSLPFTPKYFELHKKRIQLPVF
EYKEEFMSLLKNNQCIVLVGETGSGKTTQIPQWCVEYSSTCGRKGVACTQPRRVAAMSVA
QRVSEEMDVCLGSEVGYSIRFEDCSSARTLLKYMTDGMLLREGMSDPMLETYQVIMLDEA
HERTLATDILMGVLKEVIKQRKDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTFPVEIF
YTPEPERDYLEAAIRTVIQIHMCEEVAGDILLFLTGQEEIEEACKRIKKEIDNLGPDVGE
LKCIPLYSTLPPNLQQRIFESAPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFA
KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRAGKCFRLYTEKAYKNEMQENTYPEI
LRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLSALDDDGNLTDLGNIM
AEFPLDPQLAKMLIASCSLSCSNEILSITAMLSVPQCFVRPSEAKKASDDAKMRFAHIDG
DHLTLLNIYHAFKQSNEDPQWCYDNFINYRSLKSADNVRQQLSRIMDRFNLKRTSTEFTS
KDYYLNIRKSLTTGFFMQVAHLERTGHYLTIKDNQTVQLHPSTVLGHKPEWVIYNEFVLT
TKNYIRTVSEVKPEWLLKYAPQYYDLQNFPQCEAKRQLEIIQARLDTKQWQEGY
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgacgtcttgatattattgacccttacatcactaaaaataaaaaggccgaa
ggtcaagtgtatatcaaaccaagtacatcagctcagctgcaaacaaatccatatacaagc
ttaccatttactccaaagtattttgagcttcacaaaaaaagaatacagttacctgttttt
gaatacaaagaagagtttatgagtttattaaaaaacaatcaatgtattgtattagttggt
gaaactggttctggaaaaactactcaaattcctcaatggtgtgtggagtactcatcgact
tgtggtcgtaaaggtgtagcatgtactcaacctagaagagtggctgctatgtcagttgct
caacgtgtgtctgaagaaatggatgtttgtcttggttctgaagttggttacagtatacga
tttgaagattgttcttcagctagaaccctcttaaaatatatgactgatggtatgttgcta
cgtgaaggtatgtctgatccaatgttggaaacctatcaagtcattatgttggatgaagct
catgaaagaaccttagcaacagatattttgatgggtgtgcttaaagaagtgatcaagcag
cgtaaagacctaaaattagttattatgtctgctacattggatgctggaaaatttcaacaa
tattttgataatgcgccccttatgaatgttcctggccgtacatttcctgtagaaattttt
tacaccccagaaccagaaagagattatttagaagcagcaattcgtactgttattcaaatc
catatgtgtgaagaagtcgccggcgatattttactgtttctcactggtcaggaggaaatt
gaagaagcgtgtaaaagaattaaaaaagaaattgacaatttgggaccagacgttggagaa
ttaaaatgcatcccactgtactcaacacttccacctaatctgcagcaaagaattttcgag
tctgctcctcctaataaaccaaatggagctatcggacggaaagtggtagtttctactaat
attgctgaaacttctttgactattgatggagtggtatttgtcatagatcctggttttgcc
aaacaaaaggtatataatccacgaattcgtgttgaatcattacttgtatctccaataagt
aaagcgtccgctcaacaaagagctggtcgtgctggacgtacaagagcaggaaaatgtttc
agactgtacacagaaaaggcatataaaaatgaaatgcaggaaaatacttaccctgagata
ttgcgatcaaatttgggctcagtcgtgctgcaattaaagaaacttggtattgacgatttg
gttcattttgattttatggatcctcctgctcctgaaactttaatgagagctttggagctt
ttaaactatttatctgctttggatgatgatggtaatctcactgatttgggaaacattatg
gccgaattccctcttgatccacaattagccaagatgttaatcgcttcttgttcactaagt
tgttccaatgaaattctttcaatcacagctatgctgtcagtccctcagtgttttgtacga
ccttctgaagcaaagaaagcatccgacgacgcaaaaatgagatttgctcatatagacggt
gatcatcttacgttgctgaacatctatcatgcattcaaacaaagtaatgaagaccctcaa
tggtgttacgataattttataaactaccgatcgttaaagtctgctgataatgtacggcaa
cagctatcgagaattatggatcgatttaatttaaaacggacgtccacagagtttacttct
aaagattattacttgaatattcgcaaatcacttacgactgggttctttatgcaagttgca
catttggaaagaactggccattatttaactattaaagataatcaaacagttcagttgcat
ccatcaacagtgttgggtcacaagccagaatgggtcatttataatgagtttgtactaact
accaaaaattacattagaacagtgagcgaagttaaaccggaatggttattgaagtatgca
ccacaatattatgatctacagaacttcccacaatgtgaagcaaaaagacaattggaaata
attcaagcgaggttggataccaagcagtggcaagaaggttactaa
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integrated database retrieval system
