Adelges cooleyi (spruce gall adelgid): 126841995
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Entry
126841995 CDS
T09500
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03008
Ribosome biogenesis in eukaryotes
acoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126841995
09123 Folding, sorting and degradation
03018 RNA degradation
126841995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoo03021
]
126841995
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126841995
03009 Ribosome biogenesis [BR:
acoo03009
]
126841995
03016 Transfer RNA biogenesis [BR:
acoo03016
]
126841995
Transcription machinery [BR:
acoo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126841995
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
126841995
Ribosome biogenesis [BR:
acoo03009
]
Eukaryotic type
Pre-60S particles
RNases
126841995
Transfer RNA biogenesis [BR:
acoo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
126841995
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
126841995
NCBI-ProteinID:
XP_050434789
LinkDB
All DBs
Position
Unknown
AA seq
963 aa
AA seq
DB search
MGVPAFFRWLTRKYPSVIVNCIEQKSTDINGEQIPIDASEPNPNGVEFDNLYLDMNGIIH
PCTHPENKPAPKNEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETTEKAEEVARVRQNLLEAGAILPPEKPKGEHFDSNCITPGTPFMDNLSACLHYYIH
DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPNHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNQPRPCDMCGQMGHEMKDCQGLEQEVFNDGSSGIAFSSDVQF
IFVRLNVLREYLERELEMPNLPFEYEFERAIDDWVFMCFFVGNDFLPHLPSLEIRENAID
RLVALYKKTVYKTGGFLTLNGDVNLDRVQLIMSDLGLAEDEIFKKRQQTEKMFADRNKFR
KRREKREKLQRSNSAPNFVLGGQYQPMAPNAAFSVANPKQTIDDMRRQSMGNDNNQGQKR
KREDDDSSEEEQTPDEVRLWEDGFKERYYESKFDVDRTNSEFRHSVALEYVRGLCWVLQY
YYQGCPSWKWYFPYHYAPFASDFANIASVLTKFEKGTKPFRPLEQLMSVFPAASSKHVPQ
PWAILMSDPESPIIDFYPVDFKIDLNGKKFAWQGVALLPFVDEGRLHKALEPYYDMLTPE
EIRRNVRGSDRLYIQEDNSKYGLLKDLHLNKDNFNNFTSVLIDGMEGKVKTADDCVKIGG
SLPSPVMGLNVIRSNKVICVKFEDPIYGDDYVYEANRLKGVVEPPRVLKPKHMSEENSRS
WRPRIGMTQPYQRGRLDVSGHRTLSHYVPRNPGQYNAVPPPQRFSSRNNSWQPDYNNSRR
PNHNQGYNSQQLNQNNYSQNNFNSNNYRNNTNFPNKKYNHSSTSSGLNPNYSTHYSPVQQ
QASNNRTGYFTGGYQANNSMPRQAFNGNTEPTRDRPNIRYQPYDPVTQRGGPRPPGYNQH
RNY
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccagcatttttcagatggcttaccagaaagtatccttcagtaattgtcaac
tgcatcgaacagaaatcaaccgacattaatggagaacaaattcctattgatgcctccgaa
cccaatcctaatggggttgaatttgacaatttatacttggatatgaatggaataatacat
ccttgtacccatccagaaaacaagcctgctccaaaaaatgaagacgagatgatggtggcc
atctttgaatgtattgaccgtctattcagaattgttaggccacggaaactgttgtacatg
gctatagatggcgtggcaccgagagctaaaatgaaccaacagaggtctagacgttttaga
gcgtctaaagaaactacagaaaaagctgaagaagttgctcgggtcagacaaaatttacta
gaagctggtgctatactaccacccgaaaaaccgaagggagaacactttgacagcaattgc
atcactcccggaacaccttttatggacaacttatcggcttgcttgcattattatattcac
gatcgtttaaataatgatcctggatggaaaggtattaaagtcatactgtctgatgctaat
gttcctggggaaggagagcataaaattatggactacataagaaaacaaagagcacaaccc
aatcatgatccaaatacacaacatgtactttgtggggccgacgctgatcttattatgttg
ggactggcaacacatgagcctaattttaccatcattcgagaagaattcaaacccaatcaa
ccgagaccatgtgatatgtgtggtcaaatgggacatgaaatgaaagattgtcaaggttta
gaacaagaagtatttaacgatggatcgtctggcatagctttttctagtgatgtacaattt
atatttgtgcgtttaaacgttttacgtgaatatttagaaagggaattggaaatgccgaat
ttgccatttgaatatgaatttgaaagagccattgatgattgggtttttatgtgttttttt
gtgggtaatgactttttgccacacttaccctcattagaaatacgggaaaatgctatcgac
aggctagtagctctctacaaaaaaacagtgtacaaaactgggggatttttaactcttaat
ggtgatgtgaatttagacagagtacaactaattatgtccgatctaggcttagctgaagat
gaaatatttaaaaaaaggcagcaaactgaaaaaatgtttgctgacaggaataaatttagg
aaaagacgtgaaaaacgagagaaattacaacgttcaaatagtgcacccaattttgtttta
ggaggtcaataccaacccatggcaccaaatgcagcgttttcagttgctaacccaaaacaa
acaattgatgacatgagacgtcaaagtatgggaaatgataataatcaaggacaaaaacgt
aaaagggaagatgatgattcatcagaagaagaacagacacccgatgaagtacgcctgtgg
gaagatggttttaaagagcgttattatgaatcaaaatttgatgtcgatagaacaaacagt
gaatttcggcattcagttgctttggaatatgtacgtggtttatgttgggttcttcaatac
tattatcaaggttgtccttcatggaagtggtatttcccttaccattatgcaccttttgct
tcagattttgctaatatagcatcggtattaacaaaatttgaaaagggaaccaaaccattc
cgaccattagaacaacttatgagtgtttttccagcagccagtagcaaacatgtaccccaa
ccttgggctatattaatgagtgacccggaatcgcctattattgatttttatccagtcgac
tttaaaattgacctaaatggaaagaaatttgcttggcaaggtgtagcactactgccattt
gttgacgaaggacgacttcataaagctcttgaaccttattatgacatgttgacacccgaa
gaaatacgtcgtaatgtcagaggtagtgatcgcttatacattcaagaagacaattcaaag
tatggactgctcaaagatcttcatttaaataaagataattttaacaattttacttcagta
ctaattgatgggatggaaggaaaagttaagaccgctgatgactgtgttaaaattggagga
tctcttccatcacctgttatgggattgaatgtcataagatcgaataaagttatatgtgtg
aaatttgaagatccgatatatggtgacgattatgtttatgaagcaaatagactgaaagga
gttgtagaaccaccaagagtattaaaacctaaacacatgtctgaagaaaattcaaggtct
tggagacctaggattggtatgactcaaccgtatcagagaggccgacttgatgtttcaggg
catagaacattatcacattatgttccaaggaatcctggtcaatataacgctgttcctcct
ccacaaagatttagtagcagaaacaactcttggcaaccagactataacaattctagacgt
ccgaaccataatcaaggttacaattcccaacagttgaatcaaaataattattcacaaaac
aactttaattctaataactatcgtaacaacacaaatttcccaaacaaaaaatataatcat
agttcaaccagtagtggtttaaatccaaattatagtactcactattcacctgtgcaacag
caagctagcaataaccggactggatattttacaggcggctatcaagctaacaactctatg
ccaagacaagcttttaatggaaatacagaaccaacaagggatagaccaaatattcgttat
cagccatatgatcctgtcactcaaagaggtggtccaaggcctccaggttacaatcaacac
cgtaactactga
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