Adelges cooleyi (spruce gall adelgid): 126844172
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Entry
126844172 CDS
T09500
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03020
RNA polymerase
acoo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126844172
09124 Replication and repair
03420 Nucleotide excision repair
126844172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoo03021
]
126844172
03400 DNA repair and recombination proteins [BR:
acoo03400
]
126844172
Enzymes [BR:
acoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126844172
Transcription machinery [BR:
acoo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126844172
DNA repair and recombination proteins [BR:
acoo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126844172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
126844172
NCBI-ProteinID:
XP_050438042
EnsemblRapid:
LOC126844172
LinkDB
All DBs
Position
Unknown
AA seq
1913 aa
AA seq
DB search
MAASDSKAPLVTVKRVQFGILSPDECRRMSVTDGGIHFAETMDGKRPKLGGLMDPRQGVI
DRFTRCQTCTGNMTECAGHFGHIELAKPVFHIGFLPKIIKILRCVCYYCSKLLVTPTSSK
VKDILMNSKRQPRKRLVFIYDLCKAKTVCEGGDQLDITNDPNPPDTKPGHGGCGRFQPKI
RRTGLDLTAEWKHVNDESQDKKITLTAERALEILKHITDEEIIILGMDPKFSRPEWMVLT
VLPVPPLAVRPAVVMHGSARNQDDLTHKLADIVKCNNELKHNEQAGAATHILSQSLKMLQ
FHVATFVDNDMPGLPRAMQKSGKPLKSLKARLKGKEGRIRGNLMGKRVDFSARTVITPDP
NLRIDEVGVPRSIAQNMTFPEIVTPFNIDEMIKLVHRGHSQYPGAKYIIRDNGERVDLRF
HPRPSDLHLQCGYKVERHIKNGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTSP
YNADFDGDEMNLHVPQSMETRAEVENIHITSRQIITPQNNKPVMGIVQDTLTAVRKMTKR
DVFIEKEQLMNLLMHLPNWNGRMPVPCILKPKALYTGKQLFSLIIPGNVNMIRTHSTHPD
DEDNGPYRWISPGDTKVIVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEICGQFYGN
IQSVVNNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKQDVIEVIQKAHSMDLEPTPGN
TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQ
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTA
VKTAETGYIQRRLIKAMESVMVHYDGTVRNSTGQLIQFRYGEDGLRGEAVEFQNLDTIEP
SHERFEEQFKFDVSNEKLMRKLFTEDVVKELSDSNNTVTELEYEWEQLNADRDTLRQIFR
TGDSKVVLPCNLKRMIWNVQKIFGINKRLPTDLSPIKVLRGVRDLLDKCVIVAGKDQLSK
QANENATLLFQCLVRSTLCTKLVSEKFRLSSEAFEWLMGEIENRFNQAQAVPGEMVGALA
AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGTAARDA
EKAKNVLCRLEHTTLRKVTANTAIYYDPDPHNTVISEDQEFVDIYYEMPDFDPTKISPWL
LRIELDRKKMTDKKLTMEAISEKINAGFGDDLNCIFNDDNSDKLILRIRIMNLDDGKMNG
RAEDEDDGVEKMEDDMFLRCIEANMLSDMTLQGIESITKVYMHLPLADSKKRTVITENGE
FRAIADWLLETDGTSLMRVLSEKDVDPSRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGVLMKCSFEETVEVLLDAALHGE
VDPMKGVSENIIMGQLPKMGTGCFDLLLDAVRAQEGIEIPIDPEFMGRPNNDGMLLNASS
PSIISAMTPWNQPSTPVYQNLWSSTMTPGGPAFSPAGSSDSGGSTPPYWMTSDGTPGSPG
LPLSTLSPFLRSPSSVSPSYTCSLSPQYGVVSPTNYSPISPQYTACLQNLPQYSPISSNY
SYSPTSPSYSPTSPSYSANSSYSPTSPSYSPTSPAYSPTSPSYSPATPAYSPTSPTYSPT
SPTYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYRSTSPSYSPTSPSYNPTSPSY
SPTTPSYSPSSPAFRSGAISYSPTLPSYSPPSQYSTSPNYSPKSPTYSPKSPQYVPSTSY
TSKESESPQYSPMAASPIYSPSSPIYIPSNNVSYSPPSAQQHANTAANTQYSPFYSPSSP
AYSPINYSRTSPRYSPSSPNYSPSSPNRTPIAQSPPSPVYSASSPDYSGTDDQ
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaagcgattcgaaagcaccactcgtaactgtcaaaagggtgcaattcggtatt
ttgtctccggatgaatgtagacgtatgtcagtcacagatggcggtatacattttgcagaa
acaatggacggtaagcgcccaaaactcggaggtcttatggaccctcgacaaggagttatc
gatcggtttacgagatgtcagacttgcacgggtaacatgactgaatgtgctggtcatttt
ggtcacattgaacttgccaagcccgtgtttcacataggatttcttcctaaaatcataaag
atactacgatgtgtttgttactactgctcaaaacttttggttactcctactagtagtaaa
gtaaaagacattttaatgaattccaaacggcaaccgagaaaacgtttggtgtttatatac
gatttgtgtaaagccaaaacggtttgtgaaggaggcgatcaattggatataaccaacgat
ccaaatcccccagacacaaagcccggacacggtggttgcggtcgatttcaaccaaaaatt
cgacgcactggtttggacctgacggccgaatggaaacacgtcaatgatgaaagtcaagat
aaaaaaataactctaacggccgaacgagcacttgaaattctcaaacacatcacggacgaa
gagataattattttgggaatggatccgaaattttcgcgacccgaatggatggtgctgacc
gttttgccggtgccccctttggctgtccggccggcggttgttatgcatgggtcggctaga
aatcaagacgatttaacacacaagctggccgacatagtaaagtgcaacaacgaattaaaa
cacaacgaacaggccggtgctgccacacatattttatctcagagtctaaaaatgctacaa
tttcacgtcgccacatttgttgataacgacatgccaggacttccaagagctatgcaaaaa
tctggcaaacctctgaaatcgttaaaagctcggctgaagggaaaagaaggtagaattcga
ggaaatttaatgggcaaacgtgtagatttctcagcccgcactgtcatcacgccggatccg
aacttgcgcatcgatgaagtcggcgtcccacgttcaattgcccaaaacatgactttcccg
gaaattgttactccattcaacattgacgaaatgattaaactggtgcaccgcggccattct
cagtatccaggtgccaagtacatcatacgagacaacggagaaagagtggatttacgtttt
catcccagaccgtcggatttgcatttacaatgtggttataaagtcgaaagacacatcaag
aacggtgacctggtagtattcaacagacagcccacactgcacaaaatgagtatgatgggt
caccgcgtaagagttctaccgtggtctacattccgtatgaacttaagctgcacgtcacct
tacaacgctgatttcgacggcgacgagatgaatcttcacgttccacagtctatggaaacg
agggccgaagtggaaaacatccatatcacttccaggcaaatcattacgccccagaataac
aaaccagtcatgggaatcgttcaagatacattgactgcagtcagaaaaatgacaaagaga
gatgtttttatcgagaaggaacaattgatgaacttactaatgcatttgcccaactggaac
ggaagaatgcccgttccgtgtatattaaaacctaaagccttgtacacgggcaaacagttg
ttttccttgataattcccggcaatgtcaacatgatacgcacgcattctactcatccggac
gacgaagataacggtccctatagatggatatctcccggagatactaaggtaattgtggaa
cacggtgaattaattatgggtatactatgcaaaaagacattgggcacatctgccggctct
ctgcttcatatatgcatgctggaactaggccatgaaatttgcggtcagttctacggtaat
attcaaagcgtggtcaataattggcttctctacgaagggcactccattggtattggcgat
acgatcgccgatcctcagacttatctggaaattcaaaaagccatcaagaaagccaaacaa
gacgtgatcgaagtaatacagaaagcgcacagcatggacctggagccgacgcccggaaac
actttgcggcagaccttcgaaaatcaagtgaacagaattttgaacgatgctcgcgacaaa
accggaggttctgccaaaaaatctctaacggaatacaacaatctcaaggctatggtcgtg
tcgggatccaaaggatcgaacattaatatttctcaggtcattgcgtgtgttggccagcaa
aacgtagaaggtaaacgtataccgtttgggtttcggaagcgtacgttgccacattttatc
aaagacgactacggtcctgaatcgcgaggctttgtggaaaattcctatctcgccggattg
acgccatccgagttttttttccacgcgatgggaggccgcgaagggctcatcgatacagcc
gttaaaactgctgaaaccggatacattcagagacgattaatcaaagccatggagtcggtg
atggtccattacgacgggaccgttcgcaactctaccggtcaactgattcaattccggtac
ggagaagacggtttgcgcggcgaagctgtggaatttcagaatttagacaccatcgaaccg
tcgcacgagagattcgaagaacaatttaaatttgacgtttccaacgaaaagctcatgagg
aaactgtttacggaagacgtggtgaaggaattgtccgacagcaacaatacggtaaccgag
ttggaatacgaatgggaacagttaaacgctgaccgagacacgctcaggcagatttttcga
actggcgacagcaaagtggtgttgccgtgtaatctcaaacgaatgatatggaacgtacaa
aaaattttcggtatcaataaacgactgccgacggatttgagccctatcaaagtgctgcgc
ggagttagagatttattggacaaatgcgttattgtagccggcaaagaccagttgagtaaa
caggccaacgaaaatgctacattactgttccaatgtttagtgcgttcaacgctatgcacc
aaactggtatccgagaaatttcgtttgtcttcggaagcgtttgaatggttaatgggtgaa
atcgaaaaccggtttaaccaagctcaggccgttcccggagaaatggtaggagcgttggct
gctcagagtttaggagaaccggctactcaaatgacgttaaatacattccactttgctggt
gtttcatcgaaaaatgtaactctgggagtgcccagattgaaggaaatcataaacataagt
aagaggccgaaagctccttcgctgactgtttttttgacgggaacggcagctagagacgcg
gagaaagccaaaaacgtattgtgccgtctcgagcacacaaccttgagaaaagtaacggcc
aatacggccatttattatgatccagatccgcacaatacagtaataagcgaagatcaggaa
tttgtagatatctactacgagatgcccgattttgatccaacgaaaatctctccgtggttg
ttgcgtatcgaattagatcgaaaaaagatgaccgataaaaaattaaccatggaagcgata
tcggaaaagatcaatgccggttttggcgatgacctcaattgtattttcaatgacgataac
tcagacaaattaatcctacgcatacgcataatgaatctcgatgatggcaaaatgaatggg
cgcgccgaagacgaagacgacggtgttgaaaaaatggaagacgacatgttccttagatgt
atcgaagcaaatatgttatccgatatgactttgcaaggaatagagtcaataacaaaagtc
tacatgcacttgcctttggctgattctaaaaaaagaacagtgatcactgaaaatggcgaa
ttcagagcaattgccgactggttgctggaaactgacggcacgagcctgatgagagtgtta
agcgagaaggatgtcgacccctcgagaacgttttccaacgatatttgtgaaatattttct
gtgttgggcatagaagccgtgcgcaagtctgtggaaaaagaaatgaataccgtattgcag
ttttacggtttgtatgtaaactatcgtcatttggcattgctatgcgatgtaatgacagcc
aaaggtcatctgatggccattactcgacacggtatcaacaggcaagacactggagttttg
atgaaatgttcattcgaagagaccgttgaagttttattagatgcggcgttgcacggcgaa
gtggatcccatgaagggagtatcggaaaacattataatgggacaacttcccaaaatggga
acgggttgtttcgatttgctactggacgctgtaagagctcaagagggcatagaaatacct
atagaccctgaatttatggggcgcccgaacaacgatggcatgctcttgaatgcaagttcg
ccgtccattatttccgcaatgactccatggaatcaaccgtccacgccggtttatcaaaat
ttatggtcgtcaaccatgacccctggaggccccgctttctcgccggcagggtccagcgac
tccggcggtagtacgcccccatactggatgacgagtgacgggacaccgggtagtcctgga
ctgccattgagcacgttgagtccttttttgcgtagtcctagctcggtgtcgcccagttat
acgtgctcgttaagtccacagtatggtgttgtgtcgccgacaaattattctccgataagt
ccgcagtacacagcttgccttcaaaatttgcctcagtactcgcccatatcttctaactat
agttattccccgacgagtccttcgtactcaccgacaagtccatcgtactccgccaactcg
tcttattctccgaccagtccttcgtacagtccaacgtcgccagcatacagccctacgtcg
ccttcttatagtccagcgacgcccgcatacagtccaacgtctccgacgtacagtccgacc
tctccgacgtacagtccaacgtcaccgacgtatagtccaacgtctccgacgtacagccca
acgtctccgacgtacagcccaacgtctccgacgtacagcccaacgtctccgtcgtatcgt
tcaacatctccgtcgtatagtccaacgtctccgtcttacaatccaacgtctccgtcttat
agtccaacaacgccgtcgtacagtccatcgagcccagcgttccgatccggagcaattagc
tatagcccaacattgccgtcttacagtccaccgtcacaatattcgacttcgcccaactat
agtcctaagtcgcccacctatagtccaaagtctccacaatacgtaccgtcgacatcatac
acttctaaagaatcggaaagtcctcaatattcgccaatggccgccagcccgatttactcg
ccaagcagcccaatatacataccgtccaataatgtttcgtattcgccgccttctgcacag
cagcatgcaaacactgcggccaacacacaatacagtccgttttacagcccaagttctccg
gcttactcgccgattaactactccaggacaagtccgaggtactcgccaagctcgccaaac
tactcgccgagttcaccaaaccgcacgcctatcgcacagagtcctccgtcgccggtatac
tcagcttcatctcctgactacagcggtacagacgaccaatga
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integrated database retrieval system
