Adelges cooleyi (spruce gall adelgid): 126845720
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Entry
126845720 CDS
T09500
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126845720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoo03019
]
126845720
03041 Spliceosome [BR:
acoo03041
]
126845720
03009 Ribosome biogenesis [BR:
acoo03009
]
126845720
03016 Transfer RNA biogenesis [BR:
acoo03016
]
126845720
Enzymes [BR:
acoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126845720
Messenger RNA biogenesis [BR:
acoo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126845720
Spliceosome [BR:
acoo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126845720
Complex C
U4/U6.U5 tri-SnRNP related factors
126845720
Ribosome biogenesis [BR:
acoo03009
]
Eukaryotic type
Pre-60S particles
Helicases
126845720
Transfer RNA biogenesis [BR:
acoo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126845720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
DUF4807
Motif
Other DBs
NCBI-GeneID:
126845720
NCBI-ProteinID:
XP_050440521
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MDDFGADLFDEFEKPTVSSVTPLASKAINGNQQDSIDNSTKRPLQLSDDEEDNLKKPKNP
DDLFFSQNFESSVPRIKIFAVEALDGESCIHEIAIPPHFDYVPLDRKTTKTPAKVYEFEL
DPFQKEAISCIEGNQTVLVSAHTSAGKTVVAEYSIALSLRESKRVIYTTPIKALSNQKYR
EFHEEFADVGLITGDVTINPTASCLIMTTEILRCMLYRGSEVLKEVGWVIFDEIHYMRDK
ERGYVWEETLILLPDNVRMVFLSATIPNARQFAEWVAHLHNQPCHVVYTEYRPTPLQHYI
YPTGGDGLHLIVDEHNKFREDNFAMAMNVLSANTQPIKNYGQQNRPTVNNPENESHCFKL
VRTIMERSFAPVIVFSFSKKDCELYAMQMAKLDFTSDVEKGLIDKLFENATKVLSEDDRK
LPAVINIVPLIRRGIGIHHGGLLPILKETIEILFGEGLLKCLFATETFAMGLNMPARTVL
FTACRKFDGKERRFITSGEYIQMSGRAGRRGLDDKGIVMLIIDEKVSPDTVRNIIQGKPD
PINSAFHLTYNMVLNLMRVEEINPEYMLERSFFQFQNQASIPELTEKVKELSDKKKTIAI
QNEFDVRSYYLIRQQLDLLADQYHKLFTNPTHLIPFCNPGRLVKIKKNDLEFDWGVILNY
KTVTKSKHEGGGIAEAIISVLLNLENSIEKDEENPIPCPPGKQGEPEVVLIKHHMIQDLS
SLRLNNLPNDLRSRDSRMSLYNNVKEVLQRCQTDVPVLDPLSDMKIKDPEFDKIVEQIEK
FEGRLFAHPLHDNENIDELYAQYSEKDKIDKELLNAKSELKKAMSLMQMDDLKCRKRILK
RMGYCTAAEVIETKGRIACELSSADELLMTELVFNGVFNELSVPQSVALLSCFVCDEKSN
EIPAKTAELAGPLKKMQELARKIAKVCKEAKLEINEDAYVEGFKPFLMDVCYEWCRGASF
YQICQMTDIFEGSIIRAMRRLEEILRQLIQASKSIGNTDLEIKFSEAIKNVKRDIVFAAS
LYL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggatgattttggcgccgatttgtttgatgagtttgaaaagccgactgtcagctcggtg
actccattagcaagcaaagcaattaatggaaatcaacaggattctatagataattctact
aaaagacctttgcaactttctgatgacgaagaagacaatttaaagaagcctaaaaatcca
gacgatcttttcttttcacaaaactttgaatcatcagtccctagaataaaaatttttgct
gtagaagctctagatggggaatcatgcattcacgaaatagcaattcctccacattttgat
tatgtaccattagatcgaaaaaccactaagactccagctaaagtatatgaatttgaattg
gaccccttccaaaaagaagcaatttcttgcattgaaggaaaccaaactgtacttgtatca
gcacatacttcagctggtaaaactgttgtagctgaatacagtatagctttgtcattgaga
gaatctaaacgtgttatttatactactcctattaaagctcttagtaatcaaaaatacaga
gaatttcatgaagagtttgcagatgttggtttgattactggcgatgttacaattaaccca
acagcgagttgtttaattatgactactgaaattcttcgttgcatgttataccgagggtca
gaagttttaaaggaagtaggatgggtaatttttgacgaaatccattacatgcgtgacaag
gaacgtggttatgtttgggaagaaacattgattttattaccagacaatgtacgtatggtt
tttttgtcagctacgataccaaatgccagacaatttgccgaatgggtagctcatttgcat
aatcaaccatgccatgtcgtctacacagagtacagacctactcctttgcaacattacatt
tatccaactgggggagatggcttgcatcttattgtcgatgagcacaataaattccgtgaa
gacaattttgcaatggctatgaatgttttatcagctaatacgcaaccaataaaaaactac
ggacaacaaaatagaccaaccgtgaataatccagaaaatgaatctcactgttttaaatta
gtgagaacaattatggagcgtagttttgcaccagtaattgttttctcgtttagtaaaaaa
gactgtgagttatatgcaatgcaaatggccaaattagattttacatcagatgtcgaaaaa
ggattaattgataaattgtttgaaaatgcaactaaagtattaagtgaagatgatcgtaag
ttaccagcagttataaatattgtgcctttaataagacgaggaattggtattcatcatgga
ggtcttttacctatattaaaagaaaccattgaaatcctgtttggtgaaggattattaaaa
tgtctttttgctactgaaacatttgctatgggcttaaacatgcctgctagaacagtgtta
tttacggcttgtcgcaagtttgatggaaaagaaagacgatttataacatcaggagagtac
atacagatgtctggtagagcaggaagacgaggtttggatgataaaggaatagttatgtta
ataattgatgaaaaagtcagtccagacactgttaggaatattattcaagggaagcctgat
cctataaattcagcatttcacttaacttataatatggtattaaatctaatgcgtgtagaa
gaaatcaaccctgagtatatgttggaaagaagtttttttcaatttcagaatcaggcatct
ataccagagctaacagaaaaagtgaaagagttatcagataaaaagaaaactatagctatt
caaaatgaatttgatgtcagatcatattacttaatacgtcaacaacttgatttattagca
gatcagtatcataagctttttacaaatccaacacaccttatacctttttgtaatccaggc
agacttgttaagattaaaaagaatgacttagagtttgattggggtgtaattttaaattat
aaaactgtaacaaaaagcaaacatgaaggtggtggtatagctgaagcaattattagcgta
cttttaaatttagaaaattctattgagaaagacgaagaaaaccctataccttgcccaccg
ggaaaacaaggagaacctgaagttgttctcattaagcatcatatgatacaagatttaagt
tcattgcgattaaacaatttaccaaatgatttaagatcccgtgattcaagaatgtctctg
tacaataatgtcaaagaagtacttcaaaggtgccagactgatgtgcctgtgttagatcct
ctcagtgatatgaaaataaaagatccagaatttgataagatagtagaacagattgaaaaa
tttgagggtagattgtttgcacatccattacacgataatgaaaatattgatgaactctat
gcccaatattcagaaaaagacaaaatagacaaagagctcctgaatgctaaatcagaatta
aagaaggcaatgtcattgatgcaaatggatgatctcaaatgccgtaaacgtatcctaaag
cgtatgggttattgtactgctgctgaagtaattgaaactaaaggaagaatagcatgtgaa
cttagcagtgctgatgagttattaatgacagaattagtgttcaatggtgtatttaatgag
ttatcagtacctcaatcagttgcattacttagttgttttgtttgtgatgaaaaaagtaat
gaaatcccagcaaaaactgctgaacttgctgggcctctaaaaaaaatgcaggaactcgct
agaaaaatagctaaagtttgtaaagaagccaagttagaaatcaatgaagatgcttatgta
gaaggtttcaaaccatttttgatggatgtttgttatgagtggtgtcggggtgcttcattt
taccaaatatgtcaaatgactgatatatttgaaggaagtataatcagggcgatgagacga
ttagaagaaatattgagacagctaattcaagcatcaaaaagtattggaaacactgatcta
gaaattaagtttagtgaagctattaaaaatgttaaaagagatattgtatttgcagccagc
ctctacttataa
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