Aeribacillus composti: RI196_01875
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Entry
RI196_01875 CDS
T09377
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acop
Aeribacillus composti
Pathway
acop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RI196_01875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acop03019
]
RI196_01875
03009 Ribosome biogenesis [BR:
acop03009
]
RI196_01875
Enzymes [BR:
acop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RI196_01875
Messenger RNA biogenesis [BR:
acop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RI196_01875
Ribosome biogenesis [BR:
acop03009
]
Prokaryotic type
rRNA helicases
RI196_01875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WNF34828
LinkDB
All DBs
Position
364768..366147
Genome browser
AA seq
459 aa
AA seq
DB search
MGFEEATPIQMQAIPLGLNNKDIIGQAQTGTGKTAAFGIPLVEKINVHDSAVQAIVIAPT
RELAIQVSEELYKIGYDKRTRVLPIYGGQDISRQIRALKKPPHIIVGTPGRLLDHIRRNT
LRLDSVHTVVLDEADEMLNMGFIDDIEHILSNIPRERQTLLFSATMPGPIKSIAERFMKN
PTHVRVKAKEVTVPNVQQYYLEVPEKQKFEVLTRLLDLQSPELAIVFGRTKRRVDELSEA
LNVRGYSAEGIHGDLSQAKRLSVLNKFKNGAIDVLVATDVAARGLDISGITHIYNFDVPQ
DPESYVHRIGRTGRAGKSGKAMTFITARERGILETIEHTTKRKMDRMRPPTLDEALVGKQ
KMTVEKICSVVETENLDQYKNFAAELLEKYDSVPLLAAAIKMLTKEPDTTPVKLTEEPPL
PMKKEKSRNKRKLDLKNKRVGRKRSFHSARSTKGSASPK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgaagaagcgactcccattcaaatgcaggcgatccctttaggcttgaacaat
aaagacatcattggacaagcgcaaacagggacaggaaaaacagcagcttttggcatccct
ttagtagaaaaaattaatgttcatgattcagctgttcaagcgattgtgatagccccaaca
cgggaacttgctatacaagtatcagaagagttatataaaatcggctatgataaacggaca
agagtattgccgatttacggaggccaggacatttccaggcagattcgggctttgaagaag
cctccccacatcattgttggaacacctggaaggttattggatcacatacggcgcaatacg
ctgcggcttgattctgtgcacactgtcgttttagatgaagcggatgaaatgctcaacatg
gggtttattgatgatattgagcacattctttcaaatattcctagggagcgtcaaaccctt
ctattttcggcaacaatgcctggtccaattaaatcaattgcagaacgctttatgaaaaat
ccgactcatgtccgtgtaaaagcgaaagaagtaacggttccaaatgtgcagcaatattat
ttagaagtgcctgaaaaacaaaaatttgaagttttgacaagacttcttgatctgcaatca
ccggagcttgcgattgtgtttggcaggacaaagcgccgagtggacgaactttctgaagca
ttaaatgtccgcggctattcagcagaaggaattcatggcgatttaagccaagcgaaacgc
ttatctgttttgaacaaatttaaaaatggagccattgatgtacttgttgcaacagacgta
gcagccagagggcttgatatatctggtatcacccatatatataattttgatgtacctcaa
gaccctgaaagctatgtgcatagaattggaagaacaggacgggctgggaagtcaggaaaa
gcgatgacgtttataaccgcaagggaacgcggtattttggaaaccattgagcatacaaca
aaaagaaaaatggatcgaatgcgtcctcctactttagatgaagcactagtaggaaaacaa
aaaatgacggtcgaaaaaatttgctctgtagtggaaactgaaaatttagatcagtataaa
aattttgctgcggagctattggaaaaatatgattccgtcccattgcttgcagcagctatt
aaaatgttaacgaaggagccggatacgacacctgtaaaattgacggaggaacctcctctc
cctatgaagaaagaaaaaagcagaaataaacgaaagcttgatttaaaaaacaaacgggtt
ggacggaaacgctcctttcattcagcaagatcgacaaaaggatcggctagcccaaaataa
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