Aeribacillus composti: RI196_10460
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Entry
RI196_10460 CDS
T09377
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acop
Aeribacillus composti
Pathway
acop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RI196_10460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acop03019
]
RI196_10460
Messenger RNA biogenesis [BR:
acop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RI196_10460
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Deam_C
Motif
Other DBs
NCBI-ProteinID:
WNF31723
UniProt:
A0ABY9W6X8
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Position
complement(2174773..2176428)
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AA seq
551 aa
AA seq
DB search
MKKAEKIQLIALGGVGEVGKNLYIVEIDSDIFIVDAGLKYPENEMLGIDVVIPDITYLLE
RKDRVRAIFLTNGRLDRIGAIFYILKHINAPVYGTKWTIALTKERMKQYSVTADFREVNM
RKPVHFPQVTVSFFRTFSNIPDSMGVCFHTSMGAIVHTGDFKLEQSSIGSHFLDFGKMAE
IGNSGVLCLLSDSINAERPGFSGSEALAGEMINDVMYNSPGRVVVSVAETNIYRIQQIFN
AAVETGRKIAIIGKSFAKIIELARQLRYLKADDDLFIPVSHLKKLEKQNSVLLCASDSFD
PLAEISKMAKGIHKQHHITSDDTVLIAQTPTPGQELIYSKTIDLLFRAGANVVSIDKKAF
FSGHGCQEELKLMLHLMKPKYFIPVHGEFKMQIAHAKIAQSIGIREENIFLLDQGDVVEF
TPKSAKTVTKVPSGNVLIDGLGVGDVGNIVLRDRRLLSQDGILIVVVTLNKEMKKIVAGP
EIISRGFVYVRESESLISKATKMVHDTLSSCMEDVSMDWSTMKQNIRDVLNQFLYEQTKR
RPMILPIIMEV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagctgaaaaaattcaacttattgctttaggaggggttggggaagtcggaaaa
aacctgtacatcgtcgaaatcgactcggatatttttattgtggatgccggcttgaaatat
cctgaaaacgagatgctcggaattgatgtggtgataccggatattacatatttgcttgaa
cgtaaagatagggttcgggccatcttcttaacaaatggcagattggatcggatcggtgcg
attttctacattttaaaacatatcaatgcgccagtttacggaacgaaatggacaattgcc
ttgacaaaagaaagaatgaagcaatattctgttaccgctgattttcgcgaagtgaatatg
cgaaagcctgtacattttcctcaagtgacggtttctttttttcgcacattctcaaatatt
cctgattctatgggagtttgtttccatacgtcaatgggagcgatcgtgcatacaggcgat
tttaaattagagcaatcctcgatcggaagtcattttcttgattttggtaaaatggcggaa
atcggtaatagcggtgttctttgtttgctttccgacagtatcaatgcagaaagacccggc
ttttctggttccgaagctcttgccggagaaatgatcaacgatgttatgtataattcgcct
ggaagagttgttgtatctgtagcagagacgaatatttaccgaattcagcaaattttcaat
gccgcagttgagactggaagaaaaatagcaattatagggaaatcgtttgccaaaattatt
gagcttgcaagacaattacggtatttaaaggctgacgatgatttgtttattccggtgtcg
catttaaaaaagcttgaaaaacaaaactctgttctactatgtgcaagcgattcattcgat
ccgcttgcggaaatttcaaaaatggccaaaggcattcacaagcaacatcatataacttcc
gatgatacggttttaattgctcagaccccaacacccggacaagaacttatttattcgaaa
acgattgatttgctgtttcgagcaggagccaatgttgtttcgattgataaaaaagcgttt
ttttctggtcatggctgccaagaagagctgaagcttatgctacatttaatgaaaccaaaa
tactttattcccgttcatggtgaatttaaaatgcaaatagcgcatgctaaaattgcgcaa
tcgatcggaatacgcgaagaaaacatttttttgctcgatcaaggagatgtggttgaattc
acccctaaatctgccaaaacggttacaaaagtaccttctggaaatgtactaattgacggg
cttggtgtaggagatgttggaaatatcgtgctaagagaccggcgtttgttatctcaggac
ggcattttaattgttgttgttacgttaaacaaagagatgaaaaaaattgtcgctggtcct
gaaattatatcaagagggtttgtgtatgtccgtgagtctgaaagtttaatttccaaagct
acgaaaatggtgcatgacacactgtcgtcttgtatggaagatgtttcaatggattggtca
acaatgaaacaaaacattcgcgacgtcttgaatcaatttttatatgagcaaacgaagcgc
cgcccgatgattttgccaattattatggaggtttag
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