Aeribacillus composti: RI196_13890
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Entry
RI196_13890 CDS
T09377
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
acop
Aeribacillus composti
Pathway
acop03030
DNA replication
acop03430
Mismatch repair
acop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RI196_13890 (dnaE)
03430 Mismatch repair
RI196_13890 (dnaE)
03440 Homologous recombination
RI196_13890 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acop03032
]
RI196_13890 (dnaE)
03400 DNA repair and recombination proteins [BR:
acop03400
]
RI196_13890 (dnaE)
Enzymes [BR:
acop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RI196_13890 (dnaE)
DNA replication proteins [BR:
acop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RI196_13890 (dnaE)
DNA repair and recombination proteins [BR:
acop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RI196_13890 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WNF32362
LinkDB
All DBs
Position
complement(2852691..2856029)
Genome browser
AA seq
1112 aa
AA seq
DB search
MPFVHLQVKSAYSLLASAAGLDKLVRYAKKTGQTALALTDHHVMYGAISFYKICKEHGIK
PIFGLTATVIIKNEPYPFVLLAKNNSGYRNLLKLSSLLQTKFPKGLPLSFFKQYSRDLFV
ITPGRQGLIEQLLINGQIAEAGKAVEFFQSMLDPNSFYISVQNHGLPEEQQLNEKIAELR
ETIKVPIVATNDVLYVEKDDAFAHRCLLAIKDGTTVEEQDAAFASEYYLKSPAEMINNFA
NFPDSIENTVRIASECHVEIELGKTKLPKYPFSGGLSSDDFLEQLCFEGLRKKVTSPSDE
YVKRLSYELSVIKKMNFSDYFLIVWDFMKYAHEKGIVTGPGRGSAAGSLVAYVLDITNVD
PIRYNLLFERFLNPERVSMPDIDIDFPDTRRDEMIEYVARKYGKGHVAQIITFGTFAAKA
AIRDVAKALGASNKEVDVLAKHIPSKLGITLREAFEQSAAFRNILHSMEKGKEIFETALK
LEGLPRHVSTHAAGVVLSDYPLTEVIPIQNGHHNIYLTQYSMDFLEEIGLLKIDFLGLRN
LTLIEDIKRLIERYEGTKLSVHFTNYDDEKTFSLLSEGNTTGVFQFESEGMRKVLQKLKP
TNLEDLVAVNALYRPGPMENIPVYIERKHGRMPVEYLHKDLQPILEKTYGVIVYQEQIME
IAAKMAGFSLGEADLLRRAVGKKIKTILDENRNRFIIGCLKKGYDEKTANKVYDLIVKFA
NYGFNRSHAVAYSMIAYQLAYLKAHYPLYFMAALMSSIGGNQEKLAQYVREASEMGITIL
PPSIHKSGFSFLVENGSIRFGLASIKNVGIAAMKEIAKERKKKPFEDLFDFCIRMSSKAV
NRRTIEALIFSGAMDDFGQDRATLLASIDVALEHAELFKMDEKEQIVFPLDDLAAIKPKY
VEVEPFTIEEKLKFEKETLGFYLSSHPIQPYDSVLKQLGAVRLMDLSQWIEKKVHVGAYV
TNVKAIRTKSGQAMAFLNISDQSGDVEAVLFPNEYAKFSGKIKKGNVYWLTGKPEIRNEH
VQYIIQDVKDISEFKRQRALFLKIADEASEKQKLLEIKKVLQDYPGSIPVFIYHERKKKA
VKLPETFGVQPSEQCLNRLRALLGERNVALRE
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgccttttgttcacctacaagtgaagagcgcctatagtttgctggctagtgctgctgga
ttggacaagcttgtccgctatgcgaaaaaaactggtcaaacagctctagccttgacagac
catcatgtcatgtatggagcgatctctttttataaaatttgtaaagaacacgggattaaa
ccgattttcggtttaactgctaccgttatcataaaaaacgaaccgtatccttttgttttg
cttgctaaaaataacagcggataccgcaatttgcttaaattaagcagtttgctgcaaaca
aagtttccgaaaggacttccgctttctttttttaaacaatacagcagggatctttttgtg
atcacacctggcagacaaggcttgattgagcagttgcttataaacggacagattgcagag
gcaggaaaagcggtggagttttttcaaagcatgctcgatcccaattctttttacatatcc
gtacaaaatcacggcttgccggaagagcagcaattaaatgaaaaaattgcggagctgaga
gaaacgatcaaagttccgattgtcgcaacgaacgatgttttatatgttgaaaaggatgat
gcatttgcacaccgctgtttgctggcgattaaagacggaacgactgtagaagaacaagac
gcagcgtttgcttccgaatattatttaaaatccccggcggaaatgataaacaatttcgcg
aactttcctgattccattgagaatactgttcggatcgcctccgaatgccatgttgaaata
gaattaggcaaaacaaaattgcccaaataccccttttctggaggattgagcagcgatgat
tttcttgaacaactgtgctttgaaggattaagaaaaaaagtaacatccccttcggacgag
tatgtcaaaaggctttcgtatgagctgtctgttataaaaaaaatgaattttagcgattat
tttttaatcgtttgggattttatgaaatacgcgcatgaaaaaggtattgtaaccggtcca
ggccgcggttcagcagccggctctttagtggcatatgtactagatattacgaatgtagat
ccaattcgctataatctattgtttgagcgttttttaaatcctgaacgtgtttctatgcca
gatatcgatattgattttccggatacaagacgggatgaaatgattgaatatgttgcgcga
aaatacggaaaagggcatgtggctcaaatcatcactttcggtacttttgcggccaaagct
gctattcgagatgtggcaaaagcgcttggagcttcgaataaagaggtggatgtgctcgca
aagcacataccttcaaagcttggaattactttaagagaagcatttgaacaatcggcagca
tttcgaaacatccttcattcaatggaaaaaggaaaggaaatttttgaaacggctttaaag
ctggaaggcttgccacgccatgtatcgacgcatgctgcgggagtggtgctaagcgattat
ccgctgactgaagtcattccgattcaaaatggtcatcacaatatatatttaacacaatat
tcaatggattttttagaagaaatcgggctgttgaaaatcgattttttaggtctgcgaaat
ttaacgttaatagaagatatcaaacgtttaattgaacgttacgagggaacaaagctctct
gttcactttacaaattatgatgatgaaaaaacgttttcccttttatcggaaggaaatacg
acaggtgtgttccaatttgagtcagaaggaatgaggaaagttttacaaaagctaaaacct
actaatttggaagatttggttgcggttaatgctttgtatcgtccaggaccgatggaaaac
attcctgtctatatcgaacggaagcacggccggatgccggtagaatatttgcataaagat
ttgcagcctattttagaaaaaacatacggagtcattgtgtatcaagagcaaataatggaa
atcgcagcgaaaatggccggtttttcgttaggggaagcagacctgttgagacgggccgtc
ggcaaaaaaattaaaacgattttggatgaaaacagaaatcgctttattataggttgttta
aaaaaaggatacgacgaaaaaaccgcgaataaagtatacgatctcattgttaaatttgcc
aactacggttttaaccgcagccacgctgttgcctacagcatgattgcctatcagcttgct
tatttaaaagcccactatcctttatattttatggctgcgttaatgtcgagcatcggagga
aatcaagaaaaattagcgcaatatgttcgagaagcttcagaaatgggaattacaatcctg
ccgccgtccattcataaaagcggtttttcttttttagtggaaaacggatctatccgattc
ggacttgcctcgattaaaaatgttggcattgccgccatgaaagaaattgcaaaagaaaga
aaaaagaagccttttgaagatttgtttgatttttgtatcaggatgtcttcaaaggcagtc
aatcgccgaacaatagaagcgctcattttttctggtgcgatggatgattttgggcaagat
cgggcaacgttgcttgctagtattgatgttgcgctcgagcatgcagaattgttcaaaatg
gatgaaaaagagcaaatcgtttttccgcttgacgatcttgctgcgattaaaccaaagtat
gtggaagtggaaccgttcaccattgaagaaaaattaaaattcgaaaaggaaacattagga
ttttatttatcaagccatccgattcagccttacgattcggttttgaagcagctgggggca
gttcgattaatggatttatcgcaatggattgaaaaaaaagttcatgtgggcgcgtatgtg
acgaacgtaaaggcaattcgcacaaaaagcggccaggcgatggcttttctcaatataagc
gatcaaagcggggatgtagaagcggtcttgtttcctaatgaatacgcaaagttcagcgga
aaaataaagaaagggaatgtatattggttgaccggaaaaccggaaattagaaatgaacat
gttcaatatataattcaagacgtaaaagacatctcggaatttaaacggcagcgtgcttta
tttttaaaaattgcagatgaagcatcagagaaacaaaagcttctcgaaataaaaaaagta
ttgcaggattatccaggcagcatacctgtatttatttaccatgaacgaaaaaagaaagcg
gtcaagcttcccgaaacatttggtgtacaaccgtctgaacaatgtttgaatcgattgcgg
gcattgctcggagaaaggaatgtcgccttgagagaataa
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