Aeribacillus composti: RI196_18240
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Entry
RI196_18240 CDS
T09377
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
acop
Aeribacillus composti
Pathway
acop03420
Nucleotide excision repair
acop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RI196_18240 (helD)
03430 Mismatch repair
RI196_18240 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acop03400
]
RI196_18240 (helD)
Enzymes [BR:
acop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RI196_18240 (helD)
DNA repair and recombination proteins [BR:
acop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RI196_18240 (helD)
MMR (mismatch excision repair)
Other MMR factors
RI196_18240 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PhoH
AAA_22
SLFN-g3_helicase
DEAD
AAA_30
NACHT
AAA_11
AAA_16
Pox_A32
NPHP3_N
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WNF33129
LinkDB
All DBs
Position
3785515..3787857
Genome browser
AA seq
780 aa
AA seq
DB search
MNTELRQEQERLDSIMAIIVEQIGMLENETSQRRKEVIDFRKHFWDDVKVNTDTFDDYLE
TIIALRQQAQNLSVSQSTHRQAFKRLSTLRRMQEVPYFGRIDFIEEGTSAAERIYIGIST
LTDTSGENILIYDWRAPVSSVYYDYAPGPAEYTTPGGTVRGMLEKKWQYIIRGGVIKSMF
DTSLTIGDDILQQVLGRVTDKHMHNIVATIQREQNQIIRHDRGRLLIVQGPAGSGKTSAA
LQRIAYLLYKYRDKLRADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLEYRLSK
EFQIEDPYEQLEYMLTEADDSLYRTRTASIRFKASTRFFETIKTYCKSLELSGMLFKDIL
FRGKPIITAKQITERFYSSDTSLRFHSRLEKLADWLNKQIDEAEKLERTKPWVQEEIELL
SNEDYHKAHTLLRKKHGFKAETLNNYENEIEALGQLIVRKKLKPLRKRIRTLRFIDMKGV
YKQLFADPTRVKQWMEGETPEEWEDICRLTVKTLDEGKLFYEDATPYLFLKELIQGFQTN
VSIKHVLVDEAQDYSPFQFEFLKRLFPSARMTVLGDFNQAIFAHASETVDFHTLTSLYGP
DKTDSITLTRSYRSTRQIIEFTRGLVPDGERITAFERDGDKPVLTRVSDQAELHRCIASK
VADLRKRGYNTIAIICKSAAESTAAYEALKRVEDIKLVKSGSTEYEQGVVVIPAYLAKGI
EFDAVIIYNASSHVYGVESLRRLFYTACTRAMHYLQLYSVGEPSPFLQNVAPGSFLQIPG
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagaacttcggcaggagcaagaacgattggacagcataatggcgatcattgtg
gagcaaatcggcatgctggaaaacgaaacctcccagcgtcgaaaagaagtgattgatttc
cgcaaacatttttgggatgacgtcaaggtgaatactgatacgttcgacgattatcttgag
acgatcatcgccttgagacaacaggcgcagaacctgtccgtgagccaaagcacccacaga
caagccttcaagaggttgtccaccctgcgccgcatgcaggaggtgccttatttcggtcga
atcgatttcattgaggaagggacttcagctgctgaacgaatctatatcggtatctccacg
ctcacggatacaagcggagagaacatactgatctacgactggagggcgccggtctcgagt
gtctactacgattacgcgcccggcccggccgaatatactactcctggaggcacagtccgc
ggcatgctggagaaaaagtggcaatatatcatccgcggcggcgttatcaagtcgatgttc
gatacgagtctcaccattggagacgacattttacagcaggtgcttggcagagtgacagac
aaacatatgcacaacatcgtggccaccattcaacgggaacaaaaccagatcatccgtcat
gatcgcgggcggctgctcatcgtgcaaggacccgccggcagcggcaagacatcggctgcc
ctgcagcggatcgcttacttgctctacaagtatcgggataagctgagagccgatcaaatc
attttattttcacctaattcgatgtttaacagctacgtatccaatgtgctgcccgaacta
ggcgaagagaatatgcagcaggtcacctttcaggaatatttggaatatcggctgagcaaa
gaatttcaaatcgaggatccatacgagcaattggaatatatgttgactgaagcggatgac
tctttataccggactagaactgcgagcatccgattcaaggcatcaacccgtttcttcgag
acgattaaaacatactgtaagtcgctggaattatccggcatgctattcaaagatattcta
tttagaggaaaaccgatcatcaccgccaaacaaatcacagaaaggttttatagcagcgac
acctcgctccgttttcacagcagacttgaaaagctggcagattggctaaacaagcaaatc
gatgaagcggagaagcttgaacggactaagccatgggtgcaggaagaaatcgagctgctt
agcaacgaggattatcataaagctcatactctcttacggaaaaaacacggctttaaagca
gaaacgttgaacaactatgagaacgagatcgaagcgctgggccaattgatcgttcgcaag
aagctgaaaccgttgcgcaaacggatccgaacgcttcgtttcatcgacatgaagggagta
tacaagcagcttttcgccgatccaacgcgggtcaaacagtggatggaaggggaaacaccc
gaggagtgggaggatatttgccgattgactgtaaaaacgctagacgaaggcaaactgttt
tacgaagatgcaactccgtatttatttttgaaagagctgattcaaggctttcagacgaac
gtctcgatcaaacacgtgcttgtagacgaagcgcaagattattctccgtttcaattcgaa
tttttgaagcgtttgttcccttcggcgaggatgactgtgctcggcgactttaaccaagcg
atattcgctcatgccagtgaaacagtcgatttccacacgcttaccagcctatacggaccg
gataaaacggattcgatcaccttgacccgcagttacagatccacaagacagatcattgaa
tttacgcgcggactcgtacccgatggcgaacggatcactgcttttgaacgcgacggcgat
aagcctgtgttgacgagagtgtccgatcaagctgaactgcaccgctgtattgcttccaaa
gtcgcggacttgcggaaacggggatataatacgatcgcgattatatgtaaatctgctgcg
gaaagcaccgccgcatacgaagcactgaaaagagttgaagatataaaacttgtgaagagc
ggctctaccgaatatgaacaaggtgttgtcgttataccggcgtatttggcgaagggcatc
gaattcgacgccgtcatcatttataacgcttcatcgcacgtatacggcgttgagagcctg
cgcagattgttctacaccgcctgcacccgggctatgcattacttgcagctttacagtgta
ggcgaaccgagcccctttttacagaacgttgcgccgggtagtttccttcagatcccgggt
taa
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