Amycolatopsis coloradensis: LCL61_01730
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Entry
LCL61_01730 CDS
T10308
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
acor Amycolatopsis coloradensis
Pathway
acor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acor00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LCL61_01730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acor03021
]
LCL61_01730
Transcription machinery [BR:
acor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LCL61_01730
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
HC2
Motif
Other DBs
NCBI-ProteinID:
WYW14266
LinkDB
All DBs
Position
complement(413019..414419)
Genome browser
AA seq
466 aa
AA seq
DB search
MAAARTATRSGTKTATAAGEPADEAATDAAKPAARKTAAKAAGAKKAPAKKAPAKKPTTK
GAKTEDGDPEDGPVELDEADLETPDLSDLEEVEVDVVDASVTEETEEDAESDEDVEETPA
RGRRTSTDKNAGKTSDNPDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLN
AEEEVELAKRIEAGLYAAERVRNAEEEGEKLVTQMRRDLKWIVRDGERAKNHLLEANLRL
VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ
ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPIS
LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLT
DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
gtggcagccgcaagaaccgcaacccgaagcgggacgaagacagcgaccgcagccggcgag
ccggccgacgaggcagccaccgacgcggcgaagcccgcggcgcgcaagaccgccgccaag
gcggccggcgcgaagaaggccccggcgaagaaggctccggccaagaaacccaccaccaag
ggcgccaagaccgaagacggcgatccggaagacggcccggtagagctcgacgaagccgac
ctcgaaaccccggacctgtcggacctcgaagaggtcgaggtggacgtcgtcgacgcttcc
gtcaccgaggagacggaagaggacgcggagtccgacgaggacgtcgaagagacgcccgcc
cgcgggcgccgcacgtcgaccgacaagaacgccggaaagacctccgacaacccggacttc
gtctgggacgaggaagagtccgaggcgctgcgccaggcccgcaaggacgccgagctcacc
gcttcggccgactcggtccgcgcgtacctcaagcagatcggcaaggtcgccctgctgaac
gccgaggaggaggtggagctcgccaagcgcatcgaggccgggctctacgccgccgagcgc
gtccgcaacgccgaggaggagggcgagaagctcgtcacccagatgcggcgcgacctcaag
tggatcgtgcgcgacggtgagcgggcgaagaaccacctgctggaggcgaacctccggctc
gtggtctcgctggccaagcgctacaccggccgcggcatggcgttcctggacctgatccag
gagggcaacctcggcctgatccgcgcggtcgagaagttcgactacaccaagggctacaag
ttctccacgtacgccacctggtggatccgtcaggcgatcacccgcgcgatggccgaccag
gcccgcaccatccgtatcccggtgcacatggtcgaggtcatcaacaagctcggccgtata
cagcgcgaactgctgcaggacctcggccgcgagcccactcccgaagagctcgcgaaggaa
atggacatctccccggagaaggtcctcgagatccagcagtacgcccgcgagccgatctcg
ctcgaccagaccatcggcgacgagggcgactcgcagctcggtgacttcatcgaagactcc
gaggccgtcgtcgcggtcgacgcggtgtcgttcacgctgctgcaggaccagctccagtcg
gtgctgcagacgctgtccgaacgtgaagcgggtgtggtgcggctgcggttcggcctcacc
gacggccagccgcgcacgctcgatgagatcggccaggtgtacggggtgacccgtgagcgc
atccggcagatcgagtcgaagacgatgtcgaagctgcgtcacccgtcgcgttcgcaggtg
ctgcgcgactacctggactga
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