Amycolatopsis coloradensis: LCL61_03550
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Entry
LCL61_03550 CDS
T10308
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acor Amycolatopsis coloradensis
Pathway
acor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCL61_03550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acor03019
]
LCL61_03550
03400 DNA repair and recombination proteins [BR:
acor03400
]
LCL61_03550
Enzymes [BR:
acor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCL61_03550
Messenger RNA biogenesis [BR:
acor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCL61_03550
DNA repair and recombination proteins [BR:
acor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCL61_03550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WYW14621
LinkDB
All DBs
Position
780232..782337
Genome browser
AA seq
701 aa
AA seq
DB search
MDTSTLRDRAETLLQSLAGEGARLRDDQWTAIEALVAHRRRALVVQRTGWGKSAVYFLAT
ALLRERGNGPTVIISPLLALMRNQISAAARAGIHAATMNSANPQEWDQVQAAIAAGEVDV
LLVSPERLNNPDFRDTVLPKLTATAGLLVVDEAHCISDWGHDFRPDYRRLRTLLKDLPDG
VPVLATTATANDRVATDVAEQLGIGNGGDTLVLRGSLDRESLHLSVAKLPTSQARLAWLA
EHLAELPGSGIIYTLTVAAAHDVAGLLTERGYPVAAYTGKTDPADRQAAEDDLLNNNVKA
LVATSALGMGFDKPDLGFVVHLGAPSSPIAYYQQVGRAGRGVDRAEVILLPGHEDKDIWA
YFGSLAFPDELRVTQVLNALAYADRPLSTPALEPFVELSRSRLEMVLKVLDVDGAVRRVK
GGWEGTGEDWRYDKERYARVSAARTNEQNAMLAYLETTGCRMEFLRKQLDDPEATPCGRC
DNCTGKHWDITISDDVVDATRQRLRRPGVEVAPRKMWPTGMAGLDVPLSGRLPAGEQAET
GQVVGRVTDVGWGTRLRELVGPAAADTELPDPVFQACIEVLKGWQWPERPVAVVEVPSAT
RPELVHSLATRLASIGRLEYLGAVASAGPPPRQANSAQRLADLWKRLSLPEDLSVRVAAA
DGPILLVDDLIDTGWTMTLSARLLRQAGARAVLPFALASTS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggacacatcgactctccgggatcgcgccgagaccctcctccagtcgttggcgggcgag
ggcgcccgcctgcgtgacgaccagtggacggccatcgaggcgctggtcgcgcaccgccgt
cgcgcgctcgtcgtgcagcgcaccggctgggggaagtccgcggtgtacttcctggccacc
gcgttgctgcgggagcgcggcaacggtccgacggtgatcatctcgccgctgctcgcgctg
atgcgcaaccagatctccgcggcggcgagggcgggtatccacgcggcgacgatgaactcc
gcgaacccgcaggagtgggatcaggtccaggcggcgatcgcggcgggcgaggtcgacgtc
ctcctggtcagcccggagcggctgaacaacccggacttccgcgacaccgtccttcccaag
ctgaccgcgaccgccggcctgctcgtggtcgacgaggcgcactgcatctcggactggggc
cacgacttccgtcccgactaccggcggctgcggacactgctgaaggacctgcccgacggc
gtcccggtactcgccaccaccgcgaccgcgaacgaccgcgtggcgaccgacgtcgccgag
cagctcggcatcggcaacgggggcgacaccctcgtcctgcgcggcagcctggaccgcgaa
agcctgcatctgtcggtggccaagctgccgacgtcgcaggcccggctcgcctggctggcc
gaacacctggcggagctgccggggtccgggatcatctacacgctcaccgtcgccgccgcg
cacgacgtcgcggggttgctgaccgagcgggggtacccggtcgccgcctacaccgggaag
accgacccggcggaccggcaggcggccgaagacgatctgctgaacaacaacgtcaaggcg
ctggtggccacttcggcactgggcatgggcttcgacaagccggacctgggcttcgtggtc
catctcggcgccccgtcctccccgatcgcgtactaccagcaggtcggccgtgccgggcgt
ggcgtcgaccgcgccgaagtgatcctgttgccgggccacgaggacaaggacatctgggcg
tacttcggttcgctggcgttcccggacgaactccgggtgacccaagtgctcaacgcgctg
gcgtacgcggaccgtccactgtcgacaccggcgctcgaaccgttcgtggagctctcccgt
tcccggctggagatggtcctgaaggtgctggacgtcgacggcgccgtccgccgggtgaaa
ggcggctgggaaggcaccggcgaagactggcgctacgacaaggaacgctacgcgcgagta
agcgcggcgcggaccaacgagcagaacgccatgctggcgtacctggagaccaccggctgc
cggatggagttcctccggaagcagctcgacgatcccgaagcgacaccctgcgggcgctgt
gacaactgcaccggaaagcattgggacatcacgatttccgacgacgtcgtcgacgccacc
cggcaacggttgcgccgtcccggggtcgaggtcgcgccgcggaagatgtggccgaccggg
atggccgggctggacgtcccgctttccgggcggctgccggcgggcgagcaggccgaaacc
ggccaggtcgtcggccgggtgaccgacgtcggctggggcacgcggctgcgcgaactcgtc
ggcccggccgcggcggacaccgaactccccgacccggtcttccaagcctgtatcgaagtg
ctcaagggctggcagtggccggagcgcccggtggcagtggtggaagtgccttcggccacg
cgacctgagctggtccacagcttggcgacgaggctggcctcgatcggacgcctggagtac
ctgggcgccgtcgcctcggcggggccgcccccgcgtcaggcgaacagcgcgcaacggctg
gccgatctgtggaaacgcctcagcctccccgaggacctgtcggtgcgagtggccgcggcc
gacgggccgatcctgctggtcgacgacctcatcgacaccggatggacaatgacgctgtcc
gcgcgcctgctccgccaggccggagcccgtgcggtgctgccgttcgctctcgccagcacc
tcgtaa
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