Amycolatopsis coloradensis: LCL61_25765
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Entry
LCL61_25765 CDS
T10308
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
acor Amycolatopsis coloradensis
Pathway
acor03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
acor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LCL61_25765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
acor03000
]
LCL61_25765
03400 DNA repair and recombination proteins [BR:
acor03400
]
LCL61_25765
Enzymes [BR:
acor01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LCL61_25765
Transcription factors [BR:
acor03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LCL61_25765
DNA repair and recombination proteins [BR:
acor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LCL61_25765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_28
Motif
Other DBs
NCBI-ProteinID:
WYW18957
LinkDB
All DBs
Position
complement(5492187..5493650)
Genome browser
AA seq
487 aa
AA seq
DB search
MHEDFERCVRAVQSKDARFDGWFFTAVLTTRIYCRASCPVVPPKPENMSFYPSAAAAQEA
GFRACKRCRPDASPGSPQWNERADLVARAMRLIADGVVDTHGVSGLAARLGYSVRQVERH
VRAELGAGPLSLARAQRAQTARLLIETTGLSMIDVALAAGFGSVRTFNDTVREVFALSPT
ELRARVRTAPATAPGTLGLRLPYRKPLFPDNLFGHLVATGVPGVEEWRDGAYRRTLRLPH
GPAIVALKPEDGYIGCRLTLSDLRDLSTAISRCRRLLDLDADPIAVDEALAADPLLEPLV
AAAPGRRVPRTVDGDEFAVRAVLGQQVSTAAARTHAARLVLAHGAPVDDPDGGLTHVFPD
AAALADIDPESLAMPQSRKRTLLGLVAELNDGDLDLGAGSDWQRARERLHALPGFGPWTV
ESIAMRSLGDPDAFLPTDLGVKVAAKGLGLGSAAFAAHAERWRPWRAYAVQHLWATGDHP
INRLPAA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgaggatttcgagcgctgcgtccgggcggtccagtcgaaggacgcccggttcgac
ggctggttcttcaccgcggtgctgacgacgcggatctactgccgggcgagttgcccggtc
gtcccgcccaaaccggagaacatgagcttctacccgagcgcggccgccgcgcaggaggcc
gggttccgcgcctgcaagcgatgccgtccggacgcgagcccgggttcgccgcagtggaac
gagcgcgcggacctggtggccagggcgatgcggctgatcgccgacggcgtcgtcgacacc
cacggcgtgagcgggctggccgcccggctgggctacagcgtccggcaggtggagcggcat
gtgcgcgccgaactcggtgccggcccgctcagcctcgcccgcgcgcagcgggcgcagacg
gcacggctgctgatcgagacgaccggcctgtcgatgatcgacgtcgccctcgccgcgggc
ttcggcagcgtccggaccttcaacgacacggtgcgcgaggtcttcgccctgtccccgacg
gagctgcgggctcgcgtccggacggcgccggccaccgcacccggaacgctgggcctgcgc
ttgccgtaccggaagccgttgttcccggacaacctcttcgggcatctggtcgcgacaggc
gtccccggcgtcgaagaatggcgcgacggcgcgtaccgccggacgctgcggctcccgcac
ggtcccgccatcgtcgcgctcaaaccggaggacggctacatcggctgccgtctcacactc
tcggacctgcgagacctctcgaccgcgatcagccgttgccgccgcctgctcgacctcgac
gccgacccgatcgcggtcgacgaggcgctggcggcggacccgctgctcgagccactcgtt
gccgccgcgccgggcaggcgggtgccgaggacggtcgacggggacgagttcgccgtccgc
gccgtcctgggccagcaggtgtccaccgccgcggcccgcacccacgcggcccggctggtc
ctcgcgcacggtgcccccgtcgacgacccggacggcggcctcacacatgtcttcccggac
gccgccgcgctggcggacatcgacccggagagcctcgcgatgccgcagagccgcaagcgg
accctgctcggtctcgtggccgaactgaacgacggcgacctcgacctcggcgcgggaagt
gactggcagcgagcccgcgagcggctgcacgcgctgcccggtttcggcccgtggaccgtc
gagagcatcgcgatgcgctcgctcggcgatccggacgccttcctgccgaccgacctcggc
gtcaaggtcgccgcgaagggtctcgggctcggctcggccgcgttcgccgcgcacgccgaa
cgctggcgcccgtggcgtgcctacgccgtccaacacctctgggcgaccggagatcacccg
atcaaccggctgcccgccgcctga
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