Amycolatopsis coloradensis: LCL61_36580
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Entry
LCL61_36580 CDS
T10308
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acor Amycolatopsis coloradensis
Pathway
acor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCL61_36580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acor03019
]
LCL61_36580
Messenger RNA biogenesis [BR:
acor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCL61_36580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WYW21080
LinkDB
All DBs
Position
complement(7844346..7846043)
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AA seq
565 aa
AA seq
DB search
MSSLPTGPGPTTPPPALPEGALRVVALGGIGEVGRNMTVFEFGGRLLIVDCGVLFPEDDQ
PGVDLILPDFRAIEDRLEDIDGLVLTHGHEDHIGAVPFLLRLVPDLKIYGSRFTNALLAA
KAKEHRQRPNLIEVREGERRKVGEFDLEFFAVNHSIPDALAVAIRTPAGVVLHTGDIKLD
QLPLDGRLTDLAGFSRLGDEGVDLFCVDSTNAEVPGFVMPERDIGPVLDDVVRKVGQRVI
VACFASHVHRVQQVLDAAVRHGRRVAFVGRSMVRNMGIAADLGLLNVPDGLLVNLDQAGD
LPESKVLFVSTGSQGEPLSALSRMARGEHRQISIRAGDTVVLASSMIPGNETAVFGVVNG
LTRLGANVVHQGNAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWKHLRANGELAVRTG
VAPENVVIAEDGVVVDLVDGKATRTGRVEVGHVYVDGLSVGDVGESTLSDRLVLGEGGFI
AITVAVDTSTGRAVTRPTVSGRGFSDDPKALDAVLPMVEMELARTEAEGITDTHRIAQAV
RRVVGRWVADTYRRRPMIVPTVIPV
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcattgccaaccggacccggaccgaccaccccgccgcccgcgttgcccgaaggc
gccttgcgcgtggtcgcgctcggcgggatcggcgaagtcggccgcaacatgaccgtcttc
gagttcggcggccgtctgctgatcgtcgactgcggggtgctcttccccgaagacgaccag
cccggcgtcgacctgatcctgcccgacttccgcgcgatcgaagaccgcctcgaggacatc
gacggcctcgtcctcacccacgggcacgaggaccacatcggcgccgtcccgttcctgctg
cggctggtcccggacctgaagatctacggctcccggttcacgaacgcgctgctcgcggcg
aaggccaaggaacaccggcagcggccgaacctgatcgaggtccgcgagggcgagcgacgc
aaggtcggcgagttcgacctcgagttcttcgcggtcaaccactcgatcccggacgcgctc
gcggtggccatccgcacgccggcgggtgtcgtgctgcacaccggtgacatcaagctcgac
cagctccccctcgacggcaggctgaccgacctcgccgggttctcccggctcggcgacgag
ggcgtggacctgttctgcgtcgactcgaccaacgccgaggtgcccgggttcgtcatgccg
gaacgcgacatcggcccggtgctcgacgacgtcgtccgcaaggtcggccagcgcgtcatc
gtcgcctgcttcgcgagccacgtgcatcgcgtccagcaggtgctcgacgccgccgtccgg
catggccgccgggtcgccttcgtcggccggtcgatggtccggaacatgggcatcgccgcc
gacctcgggttgctgaacgtgcccgacggcctgctggtcaacctcgaccaggcgggcgac
ctgcccgagagcaaggtgctgttcgtgtcgaccggttcgcagggcgagccgctgtcggcg
ctgtcgcggatggcgcgcggcgagcaccggcagatctcgatccgcgccggcgacaccgtc
gtgctggccagctcgatgatcccgggcaacgagaccgcggtcttcggcgtcgtcaacggc
ctcacgcggctcggcgcgaacgtcgtgcatcagggcaacgccaaggtgcacgtgtccggg
cacgcgtctgcgggcgagctgctgtacctgtacaacgcggtgcgccccagcaacgtcatg
ccggtgcacggcgaatggaagcacctgcgcgccaacggtgaactggccgtgcgcaccggt
gtcgcgccggagaacgtggtcatcgccgaggacggcgtcgtggtcgacctcgtcgacggc
aaggccacgcggaccggacgggtagaggtcgggcacgtgtacgtcgacggtctctccgtg
ggcgacgtcggcgagtcgacgctgtcggacaggctcgtgctcggcgaaggcggcttcatc
gccatcaccgtcgccgtcgacaccagcaccggccgcgcggtgacccgcccgacggtgtcc
ggacgcgggttctccgacgacccgaaggcgctcgacgccgtgctcccgatggtggagatg
gaactcgccaggaccgaggccgagggcatcaccgacacgcaccgcatcgcgcaggccgtg
cgccgcgtcgtcggccgctgggtcgccgacacctaccggcgccgtccgatgatcgtgccg
acggtcatccccgtctag
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