Amycolatopsis coloradensis: LCL61_36655
Help
Entry
LCL61_36655 CDS
T10308
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
acor Amycolatopsis coloradensis
Pathway
acor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCL61_36655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acor03019
]
LCL61_36655
03016 Transfer RNA biogenesis [BR:
acor03016
]
LCL61_36655
Enzymes [BR:
acor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LCL61_36655
Messenger RNA biogenesis [BR:
acor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LCL61_36655
Transfer RNA biogenesis [BR:
acor03016
]
Prokaryotic type
tRNA degradation factors
LCL61_36655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
Mug135_C
S1_RRP5
KH_NusA_1st
KH_KhpA-B
YqzN_YkzM
Motif
Other DBs
NCBI-ProteinID:
WYW21094
LinkDB
All DBs
Position
complement(7858089..7860365)
Genome browser
AA seq
758 aa
AA seq
DB search
MTDSTGVTVHETEAVIDNGRFGTRTVRFETGRLARQAAGSVVAYLDEETMLLSATTASKH
PKEHFDFFPLTVDVEERMYAAGRIPGAFFRREGRPSTDAILTARLIDRPLRPSFTDGLRN
EIQVVITVQSLNPDDPYDVLAINAASASTQIAGLPFSGPIGGVRVALIEDQWVAFPTWKQ
LEQATFNMVVAGRMVNTGGDGSSSDIAIMMVEAEGTEQTLDLIAAGGKAPDEVSVAEGLE
ASKPFIKVLCEAQQQLAEVAAKPTGEFPVYLAYEQDAFDAVAAIATDDLANALTIAGKQD
RDNATDQVKAAVLEKVGLGEGEAFQGREKEIGAAFKALSKKIMRKRVLTDKIRMDGRGLT
DIRSLAAEVAVIPRAHGSALFERGETQILGVTTLNMLRMEQQIDSLSPETTKRYLHHYNF
PPFSTGETGRVGSPKRREIGHGMLAERALVPVLPKRDEFPYAIRQVSEALGSNGSTSMGS
VCASTMGLLNAGVPLKAPVAGIAMGLISDEVDGETRYVALTDILGAEDAMGDMDFKVAGT
KDIITALQLDTKLDGIPSEVLAAALKQAKDARLTILEVIAEAIDGPDEMSPFAPRVTSVK
IPVDKIGEVIGPKGKMINSITEETGADISIEDDGTIYVGAADGPSAEAAIDKINAIANPQ
LPKVGERFLGTVVKTAAFGAFVSLLPGKDGLVHISKLGNGKRIAKVEDVVNVGDKLRVEI
ADIDNRGKISLIVVQEEDSADAKAAEGDKAEAPKADAQ
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactccaccggagtcaccgtgcacgaaaccgaagccgtgatcgacaacggccgt
ttcggcactcgcaccgtccgcttcgagaccggccgtctggcccgtcaggccgccggttcc
gtcgtcgcgtacctggacgaagagaccatgctgctctcggcgaccaccgcgtcgaagcac
ccgaaggagcacttcgacttcttcccgctgaccgtggacgtcgaggagcgcatgtacgcc
gcgggccgcatccccggcgcgttcttccgtcgtgagggccgcccgtcgaccgacgcgatc
ctcaccgcccgcctgatcgaccgcccgctgcgcccgtcgttcaccgacggcctgcgcaac
gagatccaggtcgtcatcaccgtccagagcctcaacccggacgacccgtacgacgtgctc
gcgatcaacgccgcttcggcgtcgacccagatcgccggtctgccgttctccggtccgatc
ggcggcgtccgcgtcgcgctgatcgaggaccagtgggtcgcgttcccgacctggaagcag
ctggagcaggccaccttcaacatggtggtcgccggccgcatggtcaacacaggcggtgac
ggctcttctagtgacattgccatcatgatggtcgaggccgagggcaccgagcagaccctc
gacctgatcgccgccggcggcaaggcgccggacgaggtctcggtcgccgagggcctcgaa
gcctcgaagccgttcatcaaggtgctgtgcgaggcgcagcagcagctcgccgaggtcgcc
gccaagccgaccggcgagttcccggtctacctcgcctacgagcaggacgcgttcgacgcc
gtcgccgccatcgcgaccgacgacctcgcgaacgccctgaccatcgcgggcaagcaggac
cgtgacaacgcgaccgaccaggtcaaggccgcggtgctggagaaggtcggcctcggcgag
ggcgaagccttccagggccgtgagaaggagatcggcgcggcgttcaaggccctgtcgaag
aagatcatgcgcaagcgcgtcctcacggacaagatccgcatggacggccgcggcctgacc
gacatccgctcgctcgccgccgaggtcgccgtgatcccgcgggcgcacggttccgccctg
ttcgagcgcggtgagacccagatcctgggcgtcaccacgctgaacatgctccgcatggag
cagcagatcgactcgctctccccggagaccacgaagcggtacctgcaccactacaacttc
ccgccgttctccaccggcgagaccggccgcgtcggttcgccgaagcggcgcgagatcggc
cacggcatgctcgccgagcgcgccctcgtgccggtcctgccgaagcgggacgagttcccg
tacgcgatccgccaggtctccgaggcgctgggctccaacggctccacctcgatgggctcg
gtctgcgcctcgaccatgggtctgctgaacgcgggtgtcccgctgaaggcgccggtcgcc
ggcatcgccatgggcctcatctccgacgaggtcgacggcgagacccgctacgtcgcgctg
accgacatcctcggtgccgaggacgccatgggcgacatggacttcaaggtcgccggcacc
aaggacatcatcaccgcgctgcagctggacacgaagctcgacggcatcccgtcggaggtc
ctcgcggccgcgctgaagcaggcgaaggacgcccgcctcaccatcctggaggtcatcgcc
gaggcgatcgacggcccggacgagatgagcccgttcgccccgcgcgtcaccagcgtgaag
atcccggtggacaagatcggcgaggtcatcggcccgaagggcaagatgatcaactcgatc
accgaggagaccggcgccgacatctccatcgaggacgacggcacgatctacgtgggcgcg
gccgacggcccgtcggcggaggcggcgatcgacaagatcaacgccatcgccaacccgcag
ctgcccaaggtcggcgagcgcttcctcggcaccgtggtgaagacggccgcgttcggcgcg
ttcgtctcgctgctgccgggcaaggacggcctggtgcacatctcgaagctgggcaacggc
aagcggatcgccaaggtcgaggacgtggtcaacgtgggcgacaagctccgcgtcgagatc
gccgacatcgacaatcgcggcaagatcagcctgatcgtggtccaggaagaagactcggcg
gacgccaaggccgccgaaggcgacaaggccgaggctccgaaggccgacgcccagtaa
DBGET
integrated database retrieval system
