Amycolatopsis coloradensis: LCL61_37690
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Entry
LCL61_37690 CDS
T10308
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
acor Amycolatopsis coloradensis
Brite
KEGG Orthology (KO) [BR:
acor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acor03019
]
LCL61_37690 (hrpA)
Enzymes [BR:
acor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LCL61_37690 (hrpA)
Messenger RNA biogenesis [BR:
acor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LCL61_37690 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
SLFN-g3_helicase
AAA_16
PhoH
AAA_30
AAA_25
ABC_tran
TsaE
Zeta_toxin
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WYW21292
LinkDB
All DBs
Position
complement(8071441..8075331)
Genome browser
AA seq
1296 aa
AA seq
DB search
MASQPSPLGALRARLPELMSRDEHRLRRRLDGARKARNAESIAAQIEADIEAAELRITRR
RDSVPKISFPEELPVSQRKDEIAEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGIRGQ
IGHTQPRRLAARTVADRIASELNTELGETVGYKVRFTDHSGQDTLVKLMTDGILLAEIQT
DRMLRQYDTLIIDEAHERSLNIDFILGYVKQLLPRRPDLKVIITSATIDPERFSKHFDDA
PIVEVSGRTYPVEVRYRPIIDPDDPDADQDRDQTQAICDAVDELQHEGPGDILVFLSGER
EIRDAADALSKQDLRNTEILPLYARLSSSDQHRVFQRHTGRRVVLATNVAETSLTVPGIK
YVVDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFDARP
EFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEPPDRRQVTDGVQLLQELGAFEMSDGK
KLTETGRKLAQLPVDPRMARMVLEASRNGCVREVMIIAAALSIQDPRERPAEKQQAADEQ
HARFADKTSDFLAYLNLWEYVTEQQKALSSNQFRRMCRNEYLNYLRIREWQDIFSQLRQL
AKPLGITLDTSGPADPQRVHTSLIAGLLSHVGLKDPAKGDYLGARGARFSVFPGSALFKK
QPRFVMSAELVETSRLWGRVNARIEPEWVEPLAGHVVKRNYSEPHWERKQGAVMALEKVT
LYGVPLVADRRVNYGRIDPETSRELFIRHALVEGDWETRHHFFRENRALLDEVEDLENRA
RRRDILVDDETLFEFYDQRVPADVVSARHFDSWWKKARHTEPDLLSFEKTMLINETAGGV
READYPDFWTQGSQTFKLTYQFEPGADADGVTVHIPLPVLNQVTADGFDWQVPGLREELV
TQLIKSLPKAIRRNFVPAPDHAKLVLSRVGPAEGPLLHVVADELEALRGVVIPDDAWQLP
AVPEHLKMTFRVVDVRGKKVSEGKDIEALKRDLSGQVRATISKAADSIEREGLTTPAFGE
LPKVFASKQRGHDVKAYPALVDEGGSVAVRLLDTPGQQEQSMWAGTRRMLRLNIPSPMKF
ITRNLGNSSKLVLNRNPHGSVAALLEDCVDCAVDKLVADNGGPRWDEAGFAVLLEKVRAG
LNPGVLDVLTNVEKILRAANDVETRLADTRGPKDSLADIRAQLDGLVHKGFVTETGQDRL
KHVIRYLRGIERRLEKLPTEPTRDIQRTGDIAWLRNEYQAALDALPPGTSSPALREIRWM
LEELRVSFFAQTLGTAHPVSLKRVIKALDDAAAPRN
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcaaccttccccgctcggcgccctgcgcgctcgcctgcccgaactcatgtcg
cgcgacgagcatcgcctccggcgccggctcgacggtgcccggaaagcgcgtaacgccgag
tcgatcgccgcccagatcgaggccgacatcgaggccgccgaactccggatcacccgcagg
cgggacagcgtcccgaagatctcgttccccgaagagctgcccgtcagccagcgcaaggac
gagatcgccgaggccatccgcgaccaccaggtggtgatcgtcgccggcgagaccggttcg
gggaagacgacccagctgccgaagatctgcctcgagctcggccgcggtatccggggccag
atcgggcacacgcaaccacggcggctggccgcgcgcacggtcgccgatcgcatcgcctcc
gagttgaacaccgagctcggcgagaccgtcggctacaaggtccggttcaccgaccactcc
ggccaggacacgctggtcaagctgatgaccgacggcatcctgctcgccgagatccagacc
gaccggatgctgcggcagtacgacacgctgatcatcgacgaggcgcacgagcgcagcctc
aatatcgacttcatcctcggctacgtcaagcagctcctgccgcgccgacccgatctcaag
gtgatcatcacctcggcgaccatcgacccggagcggttctccaagcatttcgacgacgcg
ccgatcgtggaggtctccggccggacgtatccggtcgaggtccgttaccggccgatcatc
gatccggacgatccggacgccgatcaggaccgcgaccagacgcaggccatctgcgacgcc
gtcgacgaactccagcacgagggaccgggtgacatcctggtgttcctctccggcgagcgg
gagatccgcgacgccgcggacgccctgtccaaacaggacctcaggaacaccgagatcctg
ccgctgtacgcccggctctcgtcgtcggaccagcaccgggtgttccagcgccacaccggg
cgccgtgtcgtgctcgcgacgaacgtcgccgagacctcgctgaccgtgccgggcatcaag
tacgtcgtcgaccccggcaccgcgcggatctcgcgctacagccaccgcaccaaggtgcag
cggctgccgatcgaaccggtgtcgcaggcgtcggcgaaccagcgcaagggccgctgcggc
cggacgtccgacggtatctgcatccgcctgtactccgaagacgacttcgacgcccggccc
gagttcaccgatccggagatcctgcggaccaacctcgcgtcggtcatcctgcagatgacc
tcgctcggcctcggcgacatcgcggcgttccccttcgtggagccgccggatcgccgtcag
gtcaccgacggtgtccagctgctgcaggagctcggcgcgttcgagatgtccgacggcaag
aagctgaccgagaccggccgcaaactcgcgcagctcccggtcgacccgcgaatggcgcgg
atggtgctggaggcctcgcgcaacggctgcgtccgcgaagtgatgatcatcgccgccgca
ctgtccattcaggacccgcgcgagcggccggcggagaagcagcaggcggcggacgagcag
cacgcgcggttcgcggacaagacgtccgacttcctcgcgtacctgaacctgtgggagtac
gtcaccgagcagcagaaggcgttgtccagcaaccagttccgccggatgtgccgcaacgag
tacctgaattacctgcgcatccgcgaatggcaggacatcttcagccagctgcgtcagctg
gccaaaccgctcggtatcaccctcgacacctccggcccggccgatccgcaacgtgtgcac
acgtcgctgatcgccgggctgctgtcgcatgtcggcctcaaggatccggccaagggcgac
tatctcggcgcgcgcggggcacggttctcggtgttcccgggttcggcgctgttcaagaag
cagccgcggttcgtgatgtcggccgaactcgtcgaaacctcccgtctgtggggccgggtc
aacgcgaggatcgagccggagtgggtcgagccgctcgccgggcacgtggtgaagcggaac
tactccgagccgcactgggagcgcaagcagggcgcggtgatggcgctcgagaaggtgacc
ctgtacggcgttccgctcgtcgccgaccgccgggtcaactacggccgcatcgacccggag
acgagccgcgagctgttcatccggcacgcgctcgtggaaggcgactgggaaacccggcac
cacttcttccgcgagaaccgtgcgttgctcgacgaggtcgaggacctggagaaccgcgcc
cgccgccgcgacatcctggtcgacgacgagacgctgttcgagttctacgaccagcgcgtc
ccggccgacgtcgtctccgcgcggcatttcgacagctggtggaagaaggcgcgccacacc
gagcccgacctgttgagcttcgagaagacgatgctcatcaacgagaccgccggcggcgtg
cgcgaggccgactaccccgacttctggacccaaggcagccagaccttcaagctcacgtac
cagttcgagccgggggccgacgcggacggcgtcaccgtgcacatcccgctgccggtgctg
aaccaggtcaccgcggacggcttcgactggcaggtccccggcctgcgggaagaactggtg
acgcagctgatcaagtcgctgcccaaggcgatccggcgcaacttcgtgccggcgcccgac
cacgcgaaactggtgctgtcgcgggtcggcccggccgaggggccgctgctgcacgtcgtc
gccgacgagctggaagcgttgcgcggggtggtgatccccgacgacgcctggcaactgccg
gcggttcccgaacatctgaagatgaccttccgcgtggtcgacgtccgcggcaagaaggtg
tccgagggcaaggacatcgaggcgctcaaacgagatctgagcggccaggtgcgcgcgacg
atctccaaggccgccgacagcatcgagcgtgagggcctgacgacgcccgcgttcggcgag
ctgcccaaggtgttcgcgagcaagcagcgcgggcacgacgtcaaggcgtatccggcgctg
gtcgacgaaggtggttccgtggcggtgcggctgctggacacgccgggccagcaggaacag
tcgatgtgggcgggtactcggcggatgctgcggctgaacatcccgtcgccgatgaagttc
atcacccgcaacctcggcaactcgtcgaaactcgtgctgaaccggaatccgcacggctcc
gtggcggcactgctcgaagactgtgtggactgcgcggtcgacaagctcgtggccgacaac
ggcggcccgcgctgggacgaggccggattcgccgtcctgctggaaaaggtgcgcgccggg
ctgaaccccggggtactcgacgtgctgaccaacgtcgagaagatcctgcgcgcggccaac
gacgtcgaaacccggctggccgacacgcgcggcccgaaggactcgctcgcggatatccgc
gcgcagctggacggcttggtgcacaagggtttcgtcaccgagaccgggcaggacaggctg
aagcacgtcatccgatacctgcgggggatcgaacggcggctggagaaactcccgaccgag
ccgacgcgggacatccagcgcaccggcgacatcgcgtggctccgcaacgagtaccaggcg
gcgctggacgcgttgccgccaggcacctcgtcgcccgcgctgcgggagatccggtggatg
ctcgaggagctgcgggtcagcttcttcgcccagacgctcggtaccgcccaccccgtctcg
ctgaagcgcgtcatcaaagcactggacgacgccgccgccccccgcaattag
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