Amycolatopsis coloradensis: LCL61_41540
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Entry
LCL61_41540 CDS
T10308
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acor Amycolatopsis coloradensis
Pathway
acor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCL61_41540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acor03021
]
LCL61_41540
03400 DNA repair and recombination proteins [BR:
acor03400
]
LCL61_41540
Enzymes [BR:
acor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCL61_41540
Transcription machinery [BR:
acor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCL61_41540
DNA repair and recombination proteins [BR:
acor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCL61_41540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ART
Motif
Other DBs
NCBI-ProteinID:
WYW22041
LinkDB
All DBs
Position
complement(8860438..8864349)
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDTRQLIADELL
YRELVDRYGEYFTGGMGAEAIQKLATEFDVAAEAESLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLNENADGAGN
AYSSPAEAIMAFDRKALSLHAPIKIRITDRQPAKADEAALAEKGWEPGKAWLAETTLGRV
LFNELLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
AISDVLVPAGKKAILDEYEGKADQVEKRYQRGQLSHAERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREIDCGTTRGINMPIGEDIGDGKVL
RDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPAIDKLISSGISKVKVRSVLTCESA
VGICATCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VQELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLANTP
NGPLGDGDRVNVGQQLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATDFLPGELPERTKFEAKNRASVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGSTPGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgatgagctccgcatcggcctcgccaccgccgacgacatt
cgtcagtggtccttcggcgaggtgaagaagccggagaccatcaactaccggacgctcaag
cctgagaaggacggcctcttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggtgttccctcccgcctgggctacttgctcgacctg
gcgccgaaggacctcgagaagatcatctacttcgcggcctacgtgatcaccggtgtgaac
accgagctgcggcacaacgacctgccgaccctcgagaacgagatcggtgtcgagcgcaag
aacctcgagaccaagcgtgacgcggacatcgaggcacgggcgcagaagctggaagccgac
ctggccgagctggaggcggagggcgccaagtccgacgtccgccgcaaggtcaaggaaggc
ggcgagcgcgagatgcgtcagctgcgtgaccgcgccggtcgcgagctggaccgtctcgag
gaggtctggacgaccttcacgaagctcgacacccgtcagctgatcgccgacgagctgctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtcgccgcggaggccgagagcctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgcgctgaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgcggcatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgcccgatggtccagctcgacggtggccggttcgccacctccgaccta
aacgacctctaccgccgggtcatcaaccggaacaaccggttgaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggtcccggtaaccgcccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactccggccgttcggtcatcatcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcggtcgcgt
ccgcaggtgtgggacgtgctcgaagaggtcatcaccggccacccggtgatgctgaaccgt
gcgccgaccctgcaccgcctcggtatccaggccttcgagccgcagctggtcgaaggcaag
gccatccagctgcacccgctggtctgtgaagcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcggcgaacaacatcctttcgccggcgtcgggtcgtccgctcgccatgccgcgtctggac
atggtgaccggtctgttccacctgacccgcctgaacgagaacgccgacggcgcgggcaac
gcgtactcgtcgcccgctgaggcgatcatggcgttcgaccgcaaggcgctgagcctgcac
gccccgatcaagatccgcatcaccgaccgtcagcccgccaaggcggacgaagcggcgctc
gcggagaagggctgggagccgggcaaggcgtggctggccgagaccaccctgggccgtgtg
ctgttcaacgagctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cgtcaggccgcgatcgtgaacgacctcgccgagcgctactcgatgacccaggtcgcgcag
accctggaccgcctgaaggacgccggtttctactgggcgacccgttcgggtgtcacggtc
gcgatctccgacgtgctcgtcccggcaggcaagaaggccattctggacgagtacgaaggc
aaggccgaccaggtcgagaagcggtaccagcgtggtcagctgtcgcacgccgagcgcaac
aacgagctcgtcaaggtgtggacgcaggccaccgaagaggtccacaagatcatggagacg
gcgctgccggacgacaacccgatcgcgatgatcgtgaagtcgggcgcggcgggcaacatg
acgcaggtccggtcgctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtac
atcccgcgtccgatcaaggccaacttccgtgaaggcctgtcggtggcggagtacttcatc
gcgacgcacggtgcccgtaagggtctggcggacacggcgctccgtaccgccgactcgggt
tacctgacccgtcgtctggtggacgtgtcgcaggacgtcatcgtccgcgagatcgactgt
ggcaccactcgcggtatcaacatgccgatcggcgaggacatcggcgatggcaaggtcctg
cgcgaccagcacgtcgagaccagcgtgtacgcgcggaatctggcgaccgacgcggtcgac
gccaagggcaacgtcgtgctcaacgccggtgacgacatcggtgacccggcgatcgacaag
ctcatctcgagcgggatctccaaggtcaaggtgcgttcggtgctgacctgcgagtcggcc
gtcggtatctgcgccacctgctacggccggtccatggcgaccggtcagctcgtcgacgtc
ggcgaggccgtgggtatcgtcgcggcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtcgccggtgacgacatcacgaccggtctgccccgt
gtccaggagctgttcgaggctcgggtcccgaagggcaaggcgccgatcgccgacgtcgat
ggccgtgtgcgcatcgaggaaagcgagcggttctggaagatcacgctgatcccggacgac
ggcagcgaagagatcgtcttcgacaagctgtccaagcgtcagcggctcgcgaacaccccg
aacggcccgctgggcgacggtgaccgcgtcaacgtcggtcagcagctgctcgaaggcacg
ccggacccgcacgaggtcctgcgggtcatgggaccgcgcgaggcgcagatgcacctggtg
gacgaggtccagaaggtgtaccgggcgcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtccggcagatgctgcgccgggtgacgatcatcgactccggtgccacggacttc
ctgccgggcgagctgcccgagcggaccaagttcgaggcgaagaaccgggcatcggtcgcc
gagggcggcgagcccgcctcgggtcgtccggtgctgatggggatcacgaaggcctcgctg
accacggactcgtggctgtcggcggcctcgttccaggagacgacgcgtgtcctgaccgac
gcggccatcaacggccgctcggacaagctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggccggtaccgggatcaacaagtaccgcaacatccaggtgcagccgacc
gaggaggcgcgggtcgccgcttacgcgatcccgtcctacgacgacggctactacaccccg
gatgtgttcggctccacgccgggcgccgcggtgccgctggacgactacgacttcggccgc
gacttccgctga
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