Amycolatopsis coloradensis: LCL61_41545
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Entry
LCL61_41545 CDS
T10308
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
acor Amycolatopsis coloradensis
Pathway
acor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCL61_41545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acor03021
]
LCL61_41545
03400 DNA repair and recombination proteins [BR:
acor03400
]
LCL61_41545
Enzymes [BR:
acor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCL61_41545
Transcription machinery [BR:
acor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCL61_41545
DNA repair and recombination proteins [BR:
acor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCL61_41545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WYW22042
LinkDB
All DBs
Position
complement(8864441..8867941)
Genome browser
AA seq
1166 aa
AA seq
DB search
MAVSPANQATAATTSAVSRSESTGIPGAPKRVSFAKIREPLSTPNLLDVQIRSFEWFTGD
EAWFERRVEEGEENPVGGLEEVLNEISPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDM
TYAAPLFVTAEFVNNNTGEIKSQTVFMGDFPVMTDKGTFVINGTERVVVSQLVRSPGVYF
DTSVDKTTDKDVFNVRVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEA
IRERFSFSETLLATLEKDHTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKPKRYD
LAKVGRYKLNKKLGLTTPYDTGTLTEEDIVSTIEYLVRLHAGEDKATVGDQVIPVETDDI
DHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF
FGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPE
GPNIGLIGSLCSYARVNPFGFIETPYRKVVEGRVTDQVDYLTADEEDRYVKAQANAPISE
DGTFVEDRVLVRKKGGEVELIDPLDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN
MQRQAVPLLRNQAPYVGTGVELRAAVDAGDVLVAEQSGVVEELSADLITIMHDDGTRKSY
GLYKFRRSNHGTCFNHRPIVNEGDRVEQGQVIADGPSTENGEMALGKNLLVAVMPWEGHN
YEDAIILSERLVQDDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLADLDERGII
RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGI
RVFSREDDDELPPGVNELVRVYVAQKRKIQPGDKLAGRHGNKGVIGKILPAEDMPFMEDG
TPVDIILNTHGVPRRMNIGQVLELHLGWLASQGWKIEGNPDWAKNLNEELYDVDPGTNTA
TPVFDGAKEEELTGLLGATKPNRDGERMVKQNGKATLLDGRSGEPFPYPVSVGYMYILKL
HHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKS
DDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDDE
DLERAAANLGINLSRNESPSVDDVVH
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctctcccgcgaaccaggccactgctgcgaccacctcggctgtatctcgctcg
gagtccacgggaatcccgggagcccccaagcgggtctccttcgcaaagattcgcgagccg
ctcagcaccccgaacctgctcgacgtgcagatcaggtcctttgaatggttcaccggcgac
gaggcgtggttcgaacgccgcgtcgaagaaggtgaagaaaacccggtcggcggcctggaa
gaggtcctcaacgagatctcgccgatcgaagacttctccggatccatgtcgctgtccttc
tccgacccgcgcttcgacgaggtcaaggcctccgtcgaggagtgcaaggacaaggacatg
acgtacgcggccccgctgttcgtgaccgccgagttcgtgaacaacaacaccggcgagatc
aagagccagacggtcttcatgggcgacttcccggtgatgaccgacaagggcaccttcgtc
atcaacggcaccgagcgtgtcgtcgtgtcccagctggtccgttcgccgggtgtgtacttc
gacaccagcgtcgacaagaccaccgacaaggacgtcttcaacgtccgcgtcatcccgagc
cggggtgcctggctcgagttcgacgtcgacaagcgcgacaccgtcggcgtccgcatcgac
cgcaagcgccgccagccggtcaccgtgctgctgaaggcgctcggctggaccaccgaggcg
atccgcgagcgcttctccttctccgagacgctgctcgccaccctcgagaaggatcacacc
gccggcaccgacgaggcgctgctcgacatctaccgcaagctgcgcccgggcgaaccgccc
accaaggagagcgcgcagacgctgctggagaacctgttcttcaagccgaagcgctacgac
ctggccaaggtcggccggtacaagctgaacaagaagctcggcctgaccacgccgtacgac
accgggacgctgaccgaagaggacatcgtctcgacgatcgagtacctggtccgcctgcac
gcgggcgaggacaaggcgaccgtcggcgaccaggtcatcccggtcgagaccgacgacatc
gaccacttcggcaaccgtcgtctccgcaccgtcggcgagctcatccagaaccagatccgc
gtgggtctgtcccggatggagcgtgtcgtccgcgagcggatgaccacccaggacgtcgag
gcgatcacgccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaaggagttc
ttcggtacttcgcagctgtcgcagttcatggaccagaacaacccgctgtcggggctgacg
cacaagcgtcgtctgtccgccctcggcccgggtggtctgtcgcgtgagcgcgccggcatg
gaggttcgtgacgtccacccgtcgcactacggccgcatgtgcccgatcgagacgccggaa
ggcccgaacatcggcctgatcggttcgctctgctcgtacgcgcgggtcaacccgttcggt
ttcatcgagaccccgtaccgcaaggtcgtcgagggccgcgtcaccgaccaggtcgactac
ctcaccgcggacgaggaagaccgctacgtgaaggcgcaggcgaacgcgccgatctcggaa
gacggcaccttcgtcgaagaccgcgtcctggtccgtaagaagggcggcgaggtcgagctg
atcgacccgctggacgtggactacatggacgtctcgccgcggcagatggtctcggtcgcg
acggcgatgatcccgttcctcgagcacgacgacgcgaaccgcgccctgatgggtgcgaac
atgcagcgccaggccgtgccgctgctccgcaaccaggcgccgtacgtcggcaccggggtg
gagctgcgtgccgcggtcgacgccggtgacgtgctcgtcgccgagcagtccggtgtcgtc
gaggagctctcggccgacctgatcacgatcatgcacgacgacggcacgcggaagagctac
ggactgtacaagttccgtcgctcgaaccacggcacctgcttcaaccaccgcccgatcgtc
aacgagggcgaccgggtcgagcagggtcaggtcatcgccgacggcccgtccaccgagaac
ggtgagatggcgctcggcaagaacctgctcgtcgcggtcatgccgtgggagggccacaac
tacgaggacgcgatcatcctctccgagcgcctggtgcaggacgacgtgctcacgtcgatc
cacatcgaggagcacgagatcgacgcccgcgacaccaagctgggcgccgaggagatcacc
cgggacatcccgaacgtctccgaggaggtcctggccgacctcgacgagcgcggcatcatc
cgcatcggtgccgaggtccgcgacggcgacatcctggtcggcaaggtcacgcccaagggt
gagaccgagctgaccccggaggagcgcctgctccgcgcgatcttcggcgagaaggcccgt
gaggtccgcgacacctcgctgaaggtgccgcacggtgagaccggcaaggtcatcggcatc
cgcgtgttctcgcgcgaggacgacgacgagctgcccccgggcgtcaacgaactggtccgt
gtctacgtggcccagaagcggaagatccagccgggcgacaagctcgccggccgccacggg
aacaagggtgtcatcggcaagatcctccccgccgaggacatgccgttcatggaggacggc
acgcccgtcgacatcatcctgaacacccacggtgtcccgcggcgtatgaacatcggccag
gtcctggagcttcacctgggctggctggcgtcgcaggggtggaagatcgagggcaacccg
gactgggcgaagaacctcaacgaggagctctacgacgtcgaccccggcacgaacaccgcg
accccggtgttcgacggcgcgaaggaagaggagctcaccgggctgctcggcgcgaccaag
ccgaaccgcgacggcgagcgcatggtcaagcagaacggcaaggccacgctgctggacggc
cgctccggcgagccgttcccgtacccggtctcggtcggctacatgtacatcctgaagctg
caccacctggtcgacgacaagatccacgcccggtccaccggtccgtactcgatgatcacg
cagcagccgctgggtggtaaggcgcagttcggtggccagcggttcggcgagatggagtgc
tgggcgatgcaggcgtacggcgccgcatacaccctgcaggagctcctgacgatcaagtcg
gacgacgtggtcggccgcgtcaaggtgtacgaggccatcgtcaagggggagaacatcccc
gagccgggtatcccggagtcgttcaaggtgctcctgaaggagctccagtcgctctgcctc
aacgtcgaggtgctgtccagcgacggcgccgcgatcgagatgcgcgactccgacgacgag
gacctcgagcgtgccgcggccaacctcggcatcaacctgtcccgcaacgagtcgccctcg
gtggacgacgtcgtgcactga
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