Alistipes communis: A5CBH24_04210
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Entry
A5CBH24_04210 CDS
T06592
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acou
Alistipes communis
Pathway
acou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A5CBH24_04210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acou03019
]
A5CBH24_04210
03400 DNA repair and recombination proteins [BR:
acou03400
]
A5CBH24_04210
Enzymes [BR:
acou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A5CBH24_04210
Messenger RNA biogenesis [BR:
acou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A5CBH24_04210
DNA repair and recombination proteins [BR:
acou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A5CBH24_04210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
UvrD_C
AAA_19
Helicase_C
Viral_helicase1
UvrD_C_2
AAA_30
AAA_22
ResIII
AAA_16
SLFN-g3_helicase
NirdL-like_HTH
AAA_12
HTH_Crp_2
HTH_29
DUF2164
Motif
Other DBs
NCBI-ProteinID:
BBL03108
UniProt:
A0A4Y1WSP5
LinkDB
All DBs
Position
481755..486665
Genome browser
AA seq
1636 aa
AA seq
DB search
MQENPISNSLSKTDSNEASNPIRSLMPFRYGPLCYAIVDVEIGLTDHRIHDIGALRYDGA
IFHKASTEELLPFLERVEYLCGHNIIHHDAKYLFEDRQIPWRLVDTLYLSPLLFPERPYH
RLVKDDKLLSDQMNNPVNDCEKARDLLLDEMARWDAWPEQKRRLFTALLRNQPEFDGFLD
LMGAGLKNCDLREQIATVYRGRICQNVELEPLIEHYPCELAYALALIDTTDHRSITPGWV
LHNYPSVEFIIKKLRHTPCLAGCTYCNSQLDVHRSLKSLFGYNAFRTYEGEPLQERAAQA
AVEGRSLLAIFPTGGGKSLTFQLPALMAGLSVHGLTVVISPLQSLMKDQVDNLAERGITE
AVTINGMLDPITRALAIEKVQDGTAALLYISPEMLRSATIERILLARNVVRFVIDEAHCF
SSWGQDFRVDYLYIGHFIRKYQQKKGSKLPIPVSCFTATAKQKVIQDIRDYFKQTLDLNL
ELFASKATRTNLSYSVLHVDNDEEKYQRLRELIADSQCPTIVYVSRTRRTRELASRLTHD
GFRALPFNGKMDSDEKITNQEAFMNDHVRIIVATSAFGMGVDKSDVGLVIHYDISDSLEN
YVQEAGRAGRNPHLHARCYVLYGDSDLDKHFILLNQTKLSIGEIQQVWKAVKELTRQRMR
VNSSALEIARQAGWDGSGSDIETRVRTALAALEQAGYLERGNNVPHVYATGITVRNLDEA
RRRLTASPLFDSKETEQAVRIIKSLISKKYIAKAQDSEAESRIDYLADILGMSKREVISA
VERMRQEGILADSKDLSAYLLGTGDSERKSQQLLERFIQLERYLLHRIPEEGLCISCKQL
NEDAIQEGIGTSKEKDIRTLLYFLTVKGYLRKQEDADHNLQLRQQTDQQSTEARFDKRAE
ICRFAIGWLYRQAAELTRTLMQPNATGQEHTVADNAVQFSIVELLNQFKADNRTMLFERN
DLQLGEVEEALLYLSKIGALKLEGGFLVLYNAMDIRRIKDNKSRYKVDDYRLLNAFYKQK
IQQVHIVGEYANLMVKDYNAALQFVQDYFQMDYRRFIAKYFRGERINEIQRNLTPKKYEQ
LFGSLSPRQMEIISDKESHCIVVAAGPGSGKTRVLVHKLTSLLLLEDVKHEQLLMLTFSR
AAATEFKQRLMVLIGNAAHFVEIKTFHSYCFDLLGRIGNLEDAQDIVSRAARMIEQGEVE
PNKIGKTVLVIDEAQDMADDEYALVTALMTHNEEMRVIAVGDDDQNIYEFRGSDSDYMFQ
LAQRPKARFIEMTDNFRSARHPVTFANEFVRSISKRMKHTPIKSMRSEEGWVSVTHHTSE
IMYQPLVDELRCHRHAGTSCILTQTNEEAVILTGLLRKEGVPCKLIQSMDGFRFWNLSEI
RYFLRYLDKRVTTPVISGELWEEARRATSNTYGRSQNLELVKRCFEQFEHLNQTKYISDF
KEFVFESSMEDFCDVSGSEVVVSTIHKAKGREFDDVYMLLTDNYTKNAELMRRYYVGITR
AKNRLFIHTNGHCFDRLTADRHDHDDRSYTLPEEIVLQLSHRDVYLEFFKGIKREVLALQ
SGDSLQYHDFTFYTEKTGLPVAKLSTRMQKTLTDWFTKGYRVKSATVSFIVAWKPKDAPK
EEPETAVLLADLTLTL
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagaaccccatatcgaacagcctgtccaaaacggattccaatgaggcatcgaat
ccaatccgtagcctcatgccctttcggtatggaccgttgtgttatgcgattgtggacgtt
gagatcggactgaccgaccaccggattcacgacattggggcactccgctacgacggggcc
atcttccataaagcctcgacagaagagctgctacccttcctcgagcgtgtggagtatctc
tgtggtcacaacatcatccaccacgatgccaaatacctctttgaggatcgacaaattcct
tggcggctggtcgacacgctctacctctcgcccctgctctttcctgaacgtccctatcac
cggctcgtaaaggatgataagttgctcagcgaccaaatgaacaacccggtcaacgactgt
gaaaaggcccgtgatctgcttctggacgagatggcccgctgggatgcatggcccgaacag
aaacggaggctcttcaccgcactgctgaggaatcagccggagttcgacggatttctcgat
ctgatgggagccggcttgaaaaattgcgacctgcgcgaacaaatcgcaaccgtctaccga
ggccgcatctgccagaacgtcgaactcgaaccgttgatcgaacactacccctgtgaactg
gcctacgcattggcgctaatcgacacgaccgatcatcgctccatcacgccgggatgggta
ctgcacaactatccgagcgtggaattcatcatcaaaaagctgcggcacaccccctgccta
gcaggctgtacctactgcaactcccagctcgacgtccaccgtagcctcaagtcgctgttc
ggttataatgccttccgtacctacgaaggtgaaccactccaggaacgggcggcacaggcg
gccgtcgagggacgctcactgttggcaatcttccctaccggcggtggaaagtcgctcacc
tttcaactgccggcactcatggcgggactatctgtccacggactgacagtagtaatttcg
cccttgcagtcgctgatgaaggatcaggtggacaacctcgccgaacggggcatcaccgag
gccgtcaccatcaacggcatgctggaccctatcacacgggcactggccatcgagaaagtg
caggacggaactgctgcgctactctacatctcgcccgagatgctccgctcggcaacgatc
gaacgcattctccttgcccgcaacgtcgtccgcttcgtcatcgacgaggcccactgcttc
tcgtcgtggggacaggatttccgggtcgactacctctatatcggccacttcattcgcaaa
taccagcagaaaaagggaagcaaactcccgatcccggtctcctgcttcacggccacggcc
aaacagaaggtgatccaggacatccgcgactacttcaaacagacgttggatctgaatctg
gaactcttcgcctcgaaagccacacgtacaaacctgagctactcggtgctgcacgtcgac
aacgacgaagagaaataccagcggctgcgcgaactcattgccgactcacaatgtccgacc
atcgtctatgtttcgcgaactcgtcgaacccgggagttggcgtcacgcctcacccacgac
ggcttccgggcccttcccttcaacggcaagatggattctgacgagaagatcaccaaccag
gaggccttcatgaacgaccatgtacgcatcatcgtcgccacgtcggccttcggcatgggt
gtggacaagagcgacgtggggctggtgattcattacgacatctccgattcgctggagaac
tacgtacaggaggcggggcgcgccggccgcaacccccatctgcatgcccgctgctacgtc
ctctacggcgacagcgatctggacaagcacttcatcctgctgaaccagacgaagctgagc
atcggtgagatccagcaggtatggaaggccgtgaaggaactcacgcgccagcgcatgcgg
gtcaattcgtcggcactggagattgcgcgtcaggccggttgggacggttcgggctccgac
atcgagacccgggtacgaaccgcactcgcagcacttgaacaggccggctacctcgaacgg
ggtaacaacgttccccacgtctacgccacgggcatcaccgtgcggaatctcgacgaagcc
cgccgacggctgacggcctcaccgctgttcgacagcaaggagaccgaacaggcggtccgc
atcatcaagtcactcatctcgaaaaagtatatcgctaaggcgcaggactcggaggccgaa
tcgcgaatcgactacctagccgacattctgggcatgagcaagcgcgaggttatctccgcc
gtggagcgcatgcgccaagaggggattctggccgatagcaaggatctgtcggcctatctg
ctcggaacaggggattcggagcgcaagtcgcagcagctgctcgaacgcttcatccagctc
gaacgctacctgctccaccgcatcccggaggaggggctctgcatctcctgcaagcagctg
aacgaggatgccatccaggagggaatcggcacctcaaaagagaaggatatccggactctg
ctctatttccttacggtcaagggatacctccgcaaacaggaggatgcagaccacaacctg
caacttcggcaacaaaccgaccagcaatcaacggaggcccggttcgataaacgggccgaa
atctgccgcttcgccatcggatggctctaccgtcaggccgccgagctgacgcgtacgctc
atgcaacccaacgccaccgggcaggaacacaccgtcgcagacaatgccgtgcagttctcg
atcgtcgagttattgaatcaattcaaggccgacaaccggacgatgctctttgaacggaac
gacctgcagctgggcgaggtcgaggaggcactcctctatctctcgaagatcggggcactg
aagctcgaagggggatttctggtcctctacaacgcgatggacatccgcaggatcaaggac
aacaagtcgcgctacaaggtcgacgactaccggttactcaacgccttctacaaacagaag
atccagcaggtccacatcgtgggcgagtatgctaatctgatggtcaaggactacaatgcg
gcgctgcagttcgtgcaggactatttccagatggactaccggcgtttcatcgcaaaatac
ttccgcggcgaacgcatcaacgagatccagcgcaacctgacgcccaagaaatacgagcag
ctcttcgggtcgctctccccgcgacagatggagatcatctccgacaaagagtcccactgc
atcgtggttgcggccggacccggcagcggtaaaacccgagtactggtccacaaactgaca
tcgctgcttctgctcgaagatgtcaagcatgaacagctgctgatgctcactttctcgcgc
gcggcggccacagaattcaaacaacgactaatggtgctgatcggcaatgcagcccatttt
gtcgagatcaagaccttccactcctattgtttcgacctgctggggcgtatcggcaacctt
gaagatgcccaggacattgtctcccgggctgcccgaatgatcgaacagggggaggtcgaa
cccaacaagatcggcaagacggtgctcgtcatcgacgaagcacaggacatggccgacgac
gagtatgccctcgtaacggcgctgatgacccacaacgaggagatgcgcgtcatcgccgtg
ggtgacgacgaccagaacatctacgaattccggggatccgactcagactacatgttccag
ttggctcagcgccccaaggcgcgcttcatcgagatgaccgacaatttccgcagtgcccgc
catcctgtcacctttgccaacgaatttgtacgatcgatttccaagcgcatgaagcacacg
ccgattaaatcgatgcgcagcgaagaggggtgggtcagcgtcactcaccacacgtcggag
atcatgtatcagccgctggtcgacgagttgcgctgccatcgccatgcgggcacctcgtgt
atccttacccagacgaatgaggaggcggtcatcctgaccggacttctgcgcaaggagggc
gttccgtgcaaactgatccagtcgatggacggcttccgcttctggaacctctccgagata
cgttatttcctccgatacctagacaagcgagtgacgacgcccgtgatttcgggcgaactc
tgggaggaggcgaggcgtgccacgagcaatacctacgggcgaagtcagaatctggaactt
gtgaagcgctgcttcgaacagttcgagcatctcaaccagacgaaatacatcagcgatttc
aaggagttcgtcttcgaatcatcaatggaggatttctgcgatgtttcgggctccgaggtg
gtggtatcgaccatccacaaggccaaagggcgcgagttcgacgatgtctacatgcttctg
actgacaactacaccaagaatgcggagctgatgcgccgctactacgtggggatcacccgt
gccaagaaccggctgttcatccataccaacggacactgttttgaccgtctgacggcagac
cgtcacgatcacgacgatcggagctataccctacccgaagagatcgtcctgcaactctcc
caccgggacgtctatctggagttcttcaaggggatcaaacgcgaagtactagcactgcag
agcggtgattcgctgcaataccacgacttcacgttctataccgagaaaacaggcctcccc
gtagccaaactctcgacccgaatgcagaaaacacttaccgattggtttacaaaaggctac
cgggtcaaatccgcgaccgttagcttcatcgtggcctggaaacccaaggatgccccgaaa
gaggagccggagacagctgttctgctggccgatcttaccctcaccctttga
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integrated database retrieval system
