Anaeromyxobacter dehalogenans 2CP-1: A2cp1_1004
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Entry
A2cp1_1004 CDS
T00833
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acp
Anaeromyxobacter dehalogenans 2CP-1
Brite
KEGG Orthology (KO) [BR:
acp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acp03016
]
A2cp1_1004
Enzymes [BR:
acp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A2cp1_1004
Transfer RNA biogenesis [BR:
acp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A2cp1_1004
Prokaryotic type
tRNA splicing ligases
A2cp1_1004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACL64355
UniProt:
B8JEZ8
LinkDB
All DBs
Position
complement(1129166..1130632)
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AA seq
488 aa
AA seq
DB search
MTTARQGEHVPLRRIEGDLWEIPRHGGMKVPGRVYSPGPPAPDDPALQQVANVAHLPGIL
RWSLAMPDVHWGYGFPLGGVAAVDAEHGAVSPGGVGYDINCGVRVVTTRLDAEALRPRLH
ALAARIYRDVPTGVGASAAIPRLTSRELDEVLAEGARWAVARGFRAAADDADRCEEGGRL
AGADPAAVSARARERGSDQLGTLGSGNHFLELDRVARIHDDAAAEAFGLFPGQLVVQIHS
GSRGLGYQVCDEALAELAPRLASYGPDYAALPDRQLACAPVGSPEGRRYLAAMQAAANFA
WANRQVMTGLAVRALLETLGVSDRELGARLLYDVCHNVAKLEDHLVDGGVRRVLVHRKGA
TRAFGPGDPRVPAPYRDVGQPVLIPGDMGRYSYVLAGTEKAMRDTFGSSCHGAGRLLSRG
EALRRARGRSIARELADRGIEVLARGRKTLGEEMSEAYKDVAQVVAVMDGAGISRLVARL
DPLAVVKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggcgcgccagggcgagcacgtgccgctgcggcggatcgagggcgacctctgg
gagatcccgcggcacggcgggatgaaggtgcccgggcgcgtctactccccggggccgccg
gccccggacgatccggccctgcagcaggtggcgaacgtggcccacctgccggggatcctg
cgctggtcgctggccatgcccgacgtccactggggatacgggttccccctcggcggcgtg
gcggcggtggacgcggagcacggcgccgtgtcgccgggcggggtgggctacgacatcaac
tgcggcgtgcgcgtggtcaccaccaggctcgacgcggaggcgctccggccgcggctccac
gcgctcgccgcccggatctaccgcgacgtccccaccggcgtgggcgcgagcgccgcgatc
ccgaggctgacctcgcgggagctggacgaggtgctggcggagggggcgcgctgggcggtg
gcgcgcggcttccgcgccgcggcggacgacgccgatcgctgcgaggagggcgggcggctc
gccggcgcggatcccgccgcggtcagcgcgcgggcccgcgagcgcggcagcgaccagctc
ggcacgctcggcagcggcaatcactttctcgagctggaccgggtcgcccggatccacgac
gacgccgccgccgaggcgttcgggctgttccccgggcagctcgtcgtccagatccactcc
ggctcgcgcggcctcggctaccaggtgtgcgacgaggcgctcgcggagctggcgccgcgg
ctggcgtcctacggcccggactacgccgccctgcccgaccggcagctcgcctgcgccccc
gtcggcagtccggaggggcgccgctacctcgcggccatgcaggcggcggcgaacttcgcc
tgggccaaccgccaggtgatgaccggcctggcggtgcgggcgctgctcgagacgctcggc
gtctccgaccgcgagctgggcgcgcggctcctgtacgacgtctgccacaacgtggccaag
ctcgaggaccacctggtggacggcggcgtgcggcgggtgctcgtccaccgcaagggcgcc
acccgcgcgttcggccccggcgatccgcgcgtcccggcgccgtaccgcgacgtcggccag
ccggtgctcatccccggggacatgggccggtactcctacgtcctcgccgggaccgagaag
gccatgcgcgacacgttcggcagctcgtgccacggcgcggggcgcctcctctcgcgcggc
gaggcgctgcgacgcgcccgggggcgctccatcgcgcgggagctggccgatcgcggcatc
gaggtcctcgcgcgggggcgcaagaccctcggcgaggagatgagcgaggcgtacaaggac
gtggcccaggtggtggccgtgatggacggggcgggcatctcccggctggtggcgcggctc
gacccgctcgcggtggtcaagggctga
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