Anaeromyxobacter dehalogenans 2CP-1: A2cp1_1526
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Entry
A2cp1_1526 CDS
T00833
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
acp
Anaeromyxobacter dehalogenans 2CP-1
Pathway
acp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A2cp1_1526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acp03019
]
A2cp1_1526
03016 Transfer RNA biogenesis [BR:
acp03016
]
A2cp1_1526
Enzymes [BR:
acp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A2cp1_1526
Messenger RNA biogenesis [BR:
acp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A2cp1_1526
Transfer RNA biogenesis [BR:
acp03016
]
Prokaryotic type
tRNA degradation factors
A2cp1_1526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ACL64870
UniProt:
B8J515
LinkDB
All DBs
Position
1705425..1707998
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AA seq
857 aa
AA seq
DB search
MQRDLQERRRAALVDQFRKAGGKALSVREVMQRGNIHPGERTEVKRVLRDLAREGVLLRD
GNRFSLPGTKPASAERGGRRPGRPGDGAGAGRLAPSSRGRGLAGAAGRAARSGGVLGTLK
KHRDGFGFVARIDRKGEDVFVPPHEAARALDGDLVRLEIVPARGGRTAGKIVEVVERRRR
LLVGTYHARGKQSFVVPADAELEGYVPVAETAAARDGEVVKVALDPESPELRGEVVEAIG
RPGEPRVEVLKVAYARGFADVFPEAVQGEAVETPDHVRSEDWRGRRDLTALPLVTIDGED
ARDFDDAVHVERLPSRKGKPMYRLVVAIADVAHYVRAGSVLDQEAFRRGTSVYFPMQVLP
MLPERLSNGICSLNPEVDRLCMVADMVVDGRGETHATEVYEAVMRSAARCTYTEVARVLA
GERVPGRERFRESFELMAELQEKLTAMRRRRGSIDFDLPEAKIVLGDDGAVAAIERRPRN
RAHRIVEEFMLAANEAVARWFGARDLPTIYRVHGLPDEEKLQALLDLAAAHGFEVPELPA
DPRALNALLEKFHGHAQQRALNQLLLRAMMQAVYSPENIGHYGLAAEHYLHFTSPIRRYP
DLAVHRLLKEEWARRQGRPVRGTPAEALEEMAALASERERAAMEAEREIASFYAALFMED
KVGETFDGVVAAVVDFGAFVELKRWMVEGLVKVEDLPGNFELDVVQHALVDAAGGRAIRV
GDEVKILVAAASPVRRRIDFVLAGAEAMAAAAEGARGKRRRGGPGERGPGEVAVARPEAA
AARGPARGRGDLAEALQRRADGKAPRRGEAGGRRPGAQPRGGKQQAGGRRTSDGRQGGGK
PRGGKPGGGAKGRRRGR
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcgaccttcaggagcgccgccgcgcggcgctggtggaccagttccgcaaggcg
ggagggaaggccctctcggtccgcgaggtgatgcagcgcgggaacatccaccccggcgag
cgcaccgaggtgaagcgcgtgctgcgcgacctcgcgcgcgagggggtgctgctccgcgac
ggcaaccgcttctcgctgccggggacgaagcccgcgtcggcggagcggggcggccggcgg
ccggggcgcccgggcgacggcgccggggcgggccggctcgcgccctcgtcgcgcggccgc
gggctggcgggcgcggccgggcgggccgcgcgcagcggcggcgtgctcggtacgctcaag
aagcaccgcgatggcttcgggttcgtggcacggatcgaccgcaagggcgaggacgtgttc
gtgccgccgcacgaggcggcgcgcgcgctcgacggcgacctggtgcgcctggagatcgtc
ccggcgcgcggcgggcgcaccgccgggaagatcgtggaggtggtggagcgccggcggcgg
ctgctggtcggcacctaccacgcgcgcgggaagcagagcttcgtcgtcccggccgacgcc
gagctggagggttacgtgccggtggccgagacggcggccgcccgcgacggcgaggtggtg
aaggtcgcgctcgacccggagagcccggagctgcgcggcgaggtggtggaggcgatcggc
cgcccgggcgagccgcgcgtcgaggtgctgaaggtcgcgtacgcgcgcgggttcgccgac
gtgttcccggaggcggtgcagggcgaggcggtcgagacgccggaccacgtccgctccgag
gactggcgcggccggcgcgacctcaccgcgctgccgctcgtcaccatcgacggcgaggac
gcgcgcgacttcgacgacgcggtgcacgtggagcggctgccctcgcgcaagggcaagccc
atgtaccggctggtggtggccatcgccgacgtcgcccactacgtgcgggccggcagcgtg
ctggaccaggaggcgttccggcgcgggaccagcgtctacttcccgatgcaggtgctgccc
atgctgccggagcggctctccaacgggatctgctcgctcaaccccgaggtggaccggctc
tgcatggtcgccgacatggtggtggacgggcgcggcgagacgcacgcgacggaggtgtac
gaggccgtgatgcggagcgcggcccgctgcacgtacaccgaggtggcccgcgtgctcgcg
ggcgagcgggtccccgggcgcgagcgcttccgcgagtcgttcgagctgatggccgagctg
caggagaagctcaccgccatgcggcgccgccgcggcagcatcgacttcgacctgcccgag
gcgaagatcgtcctcggcgacgacggcgccgtcgccgccatcgagcgccggccgcgcaac
cgcgcgcaccgcatcgtcgaggagttcatgctggcggcgaacgaggcggtggcgcgctgg
ttcggcgcgcgcgacctccccaccatctatcgcgtgcacgggctgcccgacgaggagaag
ctccaggcgctcctcgatctcgcggcggcgcacggcttcgaggtgccggagctgcccgcc
gaccctcgcgcgctgaacgcgctgctcgagaagttccacggccacgcccagcagcgggcg
ctgaaccagctcctgctccgggccatgatgcaggcggtctacagcccggagaacatcggc
cactacggcctggccgccgagcactacctgcacttcacctcgcccatccgccgctacccc
gacctcgcggtgcaccggctgctcaaggaggagtgggcccggcgccagggccggccggtg
cgcggcacgccggccgaggcgctggaggagatggcggcgctggcctcggagcgcgagcgc
gcggccatggaggccgagcgcgagatcgcgtcgttctacgcggcgctgttcatggaggac
aaggtcggcgagaccttcgacggcgtggtggcggcggtggtggacttcggcgcgttcgtc
gagctgaagcgctggatggtcgagggcctggtcaaggtggaggacctccccggcaacttc
gagctggacgtcgtccagcacgcgctggtggacgccgccggcggccgggcgatccgcgtc
ggcgacgaggtgaagatcctggtggcggcggcgagcccggtgcggcggcggatcgacttc
gtgctggccggcgcggaggcgatggcggccgcggcggagggcgcgcgggggaagcgccgg
cgcggtgggccgggcgagcgcgggccgggcgaggtggccgtggcgaggccggaggcggcg
gccgcgcgcggtcccgcccgcgggcgcggcgacctcgccgaggcgctccagcggcgcgcg
gacggcaaggcgccgcggcgcggcgaggcgggcggccggcgcccgggcgcgcagccgcgc
ggcgggaagcagcaggccggcggccggcggacgtcggatggcaggcagggcggcggcaag
ccgcggggcgggaagccgggcggcggcgccaagggccggcgccgcgggcgctga
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