Anaeromyxobacter dehalogenans 2CP-1: A2cp1_4487
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Entry
A2cp1_4487 CDS
T00833
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acp
Anaeromyxobacter dehalogenans 2CP-1
Pathway
acp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A2cp1_4487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acp03400
]
A2cp1_4487
Enzymes [BR:
acp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A2cp1_4487
DNA repair and recombination proteins [BR:
acp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A2cp1_4487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACL67804
UniProt:
B8JCT4
LinkDB
All DBs
Position
4998821..5002522
Genome browser
AA seq
1233 aa
AA seq
DB search
MTAASGETPGASARDRVRRALEEKRRADVTGLVGAARGLLIRDLLAPGPGRARSVLAVAA
DEEEADALARDLAFFLGEGAVLRVPADAVLPYDDLSPDRGVEMERLAALARLHLAPEQAK
AVVVSARALARRTVPRRVFEAGSDLLGKGVEVDREALAAKLVLLGFARTPLVEDPGTFAV
RGGIVDLWSPADPKPVRLEFFGDEIESCRAFDPSTQRSEGDVEEVLLCPSREALFTEEGK
EAAKTAVREAAERVNRPTSRVREVLDAIDAGTPFFGLEALLPGFHPGGLGTLFDYLPAGA
AVYVDGVAAVEDALAELDEALAREHAAALKREELVLPPAAHFLPGAEARARALALPTVVR
HRVWLGTEEPIRYALEETAGIRGEIEGAHGEEGALAPLTRRLEDWRKRGIAAVVAAGTAS
ASERLRRLLEDRRQQSRVHTGPPGAPREIYDPAVHVHVFAGEISAGFVDAGAGLAVVSDE
EIFGRRVRKKARRAAEENAFAAAFRELNEGDLVVHVEHGIARYLGLTKMQIRGVEGDFLV
LAYDGADRLYLPVAKLRQVQKFTGASPETIRLDKLGGSSFALRKARVKEQLLKMAAELLD
IYAARAAHPGFAYPEPDQLFREFEAEFPWEETPDQAKAIEDVVRDMRKGRQGPAAAAPMD
RLVCGDVGYGKTEVAMRAAMLAVLAKKQVAVLVPTTVLAAQHERTFRERFKGYPVRIEAV
SRMRTSDEVKHALKAAADGKVDILVGTHRLLAADVSFKDLGLVVVDEEQRFGVAHKERLK
KLRRLVDVLTLTATPIPRTLHMSLAGVRDLSIIATPPEDRRAIRTFVMKFDPAAVKEAIE
TELKRGGQVFFVHNRVRSIHAMQRFLNELVPKARVGVAHGQMGEGKLEHVMTQFVDKELD
VLLATSIIESGLDIPSANTIIVNRADHFGLAQLYQIRGRVGRSRERAYAYLLVPARRPVT
KDAQKRLEVLQRFSELGAGFKIASHDLELRGAGNLLGKDQSGQIEAVGFELYQELLDEAV
RELKGEAPREEIDPDVQLPVPAFIPDPYMPDVHQRLFFYKRLAQASTDEDLDEVRAEMVD
RCGDPPDEVDALFEVMAVKVRLRALRIRALETGPGRLVLTLGESAALDPFQLAKHVQASA
GALRLTPDMKLVAQLGGPPAAKAAAARPAKGAAVRQSPRQAAAQRRVAADAARRAQPPPA
APPSPAMQAANGRELLQAVRVVLAGLARCARPE
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcagcatcaggagagaccccgggcgcgagcgcgcgcgatcgcgtgcgccgcgcc
ctcgaggagaagcgccgcgccgacgtcaccggcctggtcggggccgcgcgcggcctcctc
atccgcgacctgctcgccccgggtccgggccgcgcccgctcggtgctggcggtggcggcg
gacgaggaggaggcggacgcgctcgcgcgcgacctcgccttcttcctgggcgagggggcc
gtgctccgcgtccccgccgacgcggtgctcccctacgacgacctctcacccgaccgcggc
gtggagatggagcggctcgccgcgctggcgcgcctgcacctcgccccggagcaggcgaag
gcggtggtggtctcggcccgcgcgctggcgcggcgcaccgtgccgcgccgggtgttcgag
gccggctcggatctgctcggcaagggcgtcgaggtggatcgcgaggcgctcgccgcgaag
ctcgtgctgctcggcttcgcccgcacgccgctcgtggaggacccgggcacgttcgcggtg
cgcggcggcatcgtggacctgtggagccccgccgacccgaagccggtccggctcgagttc
ttcggcgacgagatcgagagctgccgcgcgttcgacccgtccacccagcgcagcgagggc
gacgtggaggaggtgctgctctgcccctcgcgcgaggcgctcttcaccgaggagggcaag
gaggccgccaagaccgcggtgcgcgaggccgccgagcgggtgaaccggcccacctcgcgc
gtgcgcgaggtgctcgacgccatcgacgccggcacgccgttcttcggcctcgaggcgctc
ctgcccggcttccacccgggcggcctcggcacgctgttcgactacctgccggccggcgcc
gcggtctacgtggacggggtggccgcggtggaggacgcgctcgcggagctcgacgaggcg
ctggcccgcgagcacgccgccgcgctgaagcgcgaggagctggtgctgccgccggcggcg
cacttcctccccggcgccgaggcccgcgcgcgcgcgctggcgctgccgacggtggtccgg
caccgggtctggctcggcaccgaggagcccatccgctacgcgctcgaggagaccgccggc
atccgcggggagatcgagggcgcgcacggcgaggagggcgcgctcgccccgctcacccgg
cgcctggaggactggcgcaagcgcgggatcgcggcggtggtggcggccgggaccgcctcg
gcctccgagcggctccgccgcctgctcgaggaccggcgccagcagtcgcgcgtccacacc
ggcccgcccggcgcgccccgcgagatctacgacccggcggtgcacgtgcacgtcttcgcc
ggcgagatctcggccggcttcgtggacgccggcgccggcctggcggtcgtctccgacgag
gagatcttcggccgccgcgtgcgcaagaaggcgcgccgcgccgcggaggagaacgcgttc
gccgcggcgttccgcgagctgaacgagggcgacctggtggtgcacgtcgagcacggcatc
gcccgctacctcggcctcaccaagatgcagatccgcggggtggagggcgacttcctcgtc
ctcgcctacgacggcgccgaccggctctacctgccggtcgcgaagctgcggcaggtgcag
aagttcaccggcgcgtcgcccgagacgatccggctcgacaagctgggcggcagctccttc
gcgctccgcaaggcgcgcgtgaaggagcagctcctcaagatggccgccgagctgctcgac
atctacgccgccagggctgcccacccgggcttcgcgtacccggagccggaccagctgttc
cgcgagttcgaggcggagtttccctgggaggagacgcccgaccaggcgaaggccatcgag
gacgtggtccgcgacatgcgcaagggccgccagggcccggccgcggcagcgcccatggac
cggctggtctgcggcgacgtgggctacggcaagaccgaggtggcgatgcgcgccgccatg
ctggcggtgctggcgaagaagcaggtggcggtgctcgtccccaccaccgtgctcgcggcg
cagcacgagcgcaccttccgcgagcggttcaagggctatccggtgcgcatcgaggcggtc
tcgcgcatgcgcacctccgacgaggtgaagcacgcgctgaaggccgccgccgacggcaag
gtggacatcctcgtcggcacgcaccggctgctcgccgccgacgtctcgttcaaggacctg
ggcctggtggtggtggacgaggagcagcgcttcggggtcgcgcacaaggagcgcctgaag
aagctgcgcaggctcgtcgacgtgctcacgctcaccgccacgcccatcccccgcaccctg
cacatgagcctcgccggcgtgcgcgacctctccatcatcgcgacgccgcccgaggaccgc
cgcgccatccgcacgttcgtgatgaagttcgacccggccgcggtgaaggaggcgatcgag
accgagctgaagcgcggcgggcaggtgttcttcgtccacaaccgcgtccgctcgatccac
gccatgcagcgcttcctgaacgagctcgtgccgaaggcgcgggtgggcgtcgcgcacggc
cagatgggcgaggggaagctcgagcacgtcatgacgcagttcgtggacaaggagctcgac
gtgctcctcgccaccagcatcatcgagtccggcctcgacatccccagcgcgaacaccatc
atcgtgaaccgcgcggatcacttcggcctggcgcagctctaccagatccgcggccgcgtc
ggccggagccgcgagcgcgcctacgcgtacctgctcgtgccggcgcggcgcccggtcacg
aaggacgcgcagaagcggctcgaggtgctgcagcgcttcagcgagctcggcgcgggcttc
aagatcgcgagccacgacctcgagctccgcggcgccggcaacctgctcggcaaggaccag
tccggccagatcgaggcggtgggcttcgagctgtaccaggagctgctcgacgaggcggtg
cgcgagctgaagggcgaggcgccgcgcgaggagatcgacccggacgtgcagctcccggtg
ccggcgttcatccccgacccgtacatgccggacgtccaccagcggctgttcttctacaag
cggctggcgcaggcctccaccgacgaggacctcgacgaggtccgcgccgagatggtggac
cgctgcggcgacccgccggacgaggtggacgcgctgttcgaggtgatggcggtgaaggtc
cggctgcgcgcgctgcgcatccgcgcgctcgagaccgggcccgggcggctcgtgctcacg
ctgggcgagtcggccgcgctcgacccgttccagctcgcgaagcacgtgcaggcctcggcc
ggcgcgctccggctcaccccggacatgaagctcgtggcgcagctcggcgggccgcccgcc
gcgaaggcggccgcggcgcgcccggcgaagggcgccgccgtccggcagagcccgcgccag
gctgcggcacagcgccgcgtcgcggccgacgccgcccgcagggcccagccgccgccggcc
gcgccgccgtcgccggcgatgcaggccgcgaacggccgcgagctgctgcaggccgtgcgc
gtggtgctcgccgggctggcgcgctgcgcgcgcccggagtga
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