Achromobacter sp. PD1: ACM1PE_03060
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Entry
ACM1PE_03060 CDS
T11306
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acpd Achromobacter sp. PD1
Pathway
acpd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACM1PE_03060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acpd03400
]
ACM1PE_03060 (mfd)
Enzymes [BR:
acpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACM1PE_03060 (mfd)
DNA repair and recombination proteins [BR:
acpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACM1PE_03060 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XPR18756
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Position
complement(661391..664873)
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AA seq
1160 aa
AA seq
DB search
MPASSLMPAPSAPATFAPPVPATAPTLSALKAGARYAQPRPPGSGDAWLLADLARQASAP
LVILTAEPVEAQRLAEEIQLFAPDLRVRQLPDWETLPYDAFSPHQDLISERLHTLHSLMT
KSVDVLTVPITTALYRLAPPSFLAAYTFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPG
EFCLRGGLIDLFPMGSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMD
EDARNRFRARFREVFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFEETATLFDYLTQGTV
TVTVGDIDDAIQRFNQDTSSRYGFLKSDRERPVLPPSELFLDNETLYARLKDFRRLSLTA
GQPHPDFRAAPDVSVARRSEDPIAKLRALVQAGQTRVLLCADSAGRRETLVQMLNEFGVT
PDAQPDTIEAFLASDAHFGIVAAPLSTGFGLPQANLAFLTENDLYPGLATTGRRGKRDQE
RASNVEAMVRDLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGGMEFLHLEYANGSTLYVP
VSQLHVIARYSGADPEAAPLHQLGSGQWDKARRKAARQVRDTAAELLALYAQRAAREGYA
FNLPLNDYQAFAEGFGFEETADQAAAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAA
FLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVKVVELSRFRSAKEVSAAIEGINDG
RVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRT
LGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETI
HNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANT
IVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSG
FYLAMHDLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRAGEEPDLDAPFNLAC
EVNLHAPALLPSDYCADVHARLGIYKRLAHAADEDDLIHIQEELIDRFGKLPEAAQTLLA
THRLRLAAQPLGIVKIDASETQALLQFGPKTSVDPGKIIELVQRQRHIKLAGQDKLRVEI
KAAQIPARADAVRAVLRALK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcttccagcctgatgccagccccctccgcccccgctaccttcgcgcctcccgtc
cccgccacggcccccactctgtccgcgctgaaggccggcgcgcgctatgcgcagccgcgc
ccgccagggtccggcgacgcctggctgctggcggatctggcgcggcaggcctcggcgccg
ctggtcatcctgaccgccgagccggtcgaggcccagcgcctggccgaggaaatccagctg
ttcgccccggacctgcgggtgcgccagttgcccgactgggaaacgctgccctacgacgcc
ttctcgccgcaccaggacctgatttcggaacgcttgcacacgctgcactcgctgatgacc
aagtcggtggacgtgctgaccgtgccgatcaccacggcgctgtaccggctggcgccgccc
tctttccttgcggcctacaccttttccttcaaacagaaggacaagctcaacgaagccgcg
ctgcgcgcccagctgaccctggccaactacaaccacgtcacccaggtgacggcgcccggc
gagttctgcctgcgcggcggcctgatcgacctgttccccatgggctcggtggtgccctac
cgcctggacctgttcgacgacgagatcgagaccatccgcagcttcgacgtggacacgcag
cgcagcctgtacccggtgcgcgaagtgcaactgctgcccggccgcgaattcccgatggac
gaagacgcgcgcaaccgcttccgggcgcgcttccgtgaagtcttcgaaggcgatccttcg
cgcgccttgccttacaaggacatcggcaacggcattccgttcgccggcgtcgagtactac
ctgccgctcttcttcgaggaaacggcgaccctgttcgactacctgacgcaaggcacggtc
accgtcaccgtaggcgacatcgacgacgccatccagcgcttcaaccaggacacctccagc
cgctacggcttcctcaagagcgaccgcgaacggccggtgctgccgccgtccgaactgttc
ctggacaacgagacgctctacgcgcggctgaaggacttccgtcgcctgtcgctgaccgcc
ggccagccgcacccggacttccgcgcggcgcctgatgtgagcgtggcgcggcgttctgaa
gatcccatcgccaagctgcgcgcgctggtgcaggccggccagacacgcgtgctgctgtgc
gccgactccgccggccggcgcgagaccctggtgcagatgctcaacgagttcggcgtcaca
ccggacgcacagcccgacaccatcgaagccttcctcgcctcggacgcccatttcggcatc
gtcgccgcgccgctgtccaccggcttcggcctgccccaggccaatctggctttcctcacc
gaaaacgacctgtacccgggcctggccaccaccggccgccgcggcaagcgcgaccaggaa
cgcgccagcaacgtcgaagccatggtgcgcgacctgtccgagctgcgtgcaggcgacccc
gtggtccatgcgcagcacggcatcggccgctaccacggcctggtcaacatggacatgggc
gaaggcgggatggaattcctgcatctggagtacgccaacggcagcacgctatacgtgccg
gtgtcgcagctacacgtgatcgcccgctacagcggcgccgatccggaagccgcgcccctg
caccagctgggctccggccaatgggacaaggcgcgccgcaaggccgcccgccaggtccgc
gacaccgccgccgagctgctggcgctgtacgcccagcgcgccgcgcgcgaaggctacgcc
ttcaacctgccgctcaacgactaccaggccttcgccgagggcttcggcttcgaggaaaca
gccgaccaggccgccgccatcgaggccgtcatcgccgacatgacctccggccgccccatg
gaccgcctggtctgcggcgacgtgggcttcggcaagaccgaggtcgcgctgcgcgccgcc
ttcctggccgtggccaacggcaagcaggtcgccctgctctgccccaccacgctgctggcc
gaacaacatgcgcagaccttctccgaccgcttcgccgactggcccgtgaaggtcgtggag
ctgtcgcgcttccgctcggccaaggaagtttccgccgccatcgaaggcatcaacgacggc
cgcgtggacatcgtcatcggcacccacaagatcctgtccaaggacgtgaaattcaagcgc
ctgggcctggtcatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaagccttg
aaggcgctgcgcgccgaggtcgacgtgctgacgctgaccgccacgcccattccgcgcacg
ctgggcatgtcgctggaaggcatccgcgacttctccgtcatcgccaccgcgccgcaaaag
cgcctggccatcaagaccttcgtgcggcgcgaggacggcagcaccctgcgcgaagcgctc
ttgcgcgaactcaagcgcggcggccagtgctatttcctgcacaacgaagtcgagaccatc
cacaaccgccgagcccgcctggaagaactggtgcccgaggcccgcatcgccgtggcccat
ggccagatgcccgagcgcgagctggaacaggtgatgaagggcttctaccagcagcgctac
aacgtgctgttgtgcaccaccatcatcgaaaccggcatcgacgtgcccagtgccaacacc
attgtgatccaccgcgccgaccgcttcgggctggcccaactgcaccagctgcgcggccgg
gtcgggcgctcgcaccaccaggcctacgcctacctgctgacgcccggcgaggacgccatc
accaacaacgccaagaagcgcctggaagccatccaggccatggaagagctgggttcgggc
ttctacctggccatgcatgacctggagatccgcggcacgggcgaagtgctgggcgattcg
cagtccggcaacatccaggaagtgggcttctcgatgtacaacgagatgctcaacgaagcc
gtgcgcgcactgcgcgccggcgaagaacccgacctggacgcgcccttcaacctggcctgc
gaagtcaacctgcacgccccggcgctgctgccgtccgactattgcgccgacgtccatgcg
cgcctgggcatctacaagcgcctggcgcacgccgcggacgaagacgacctgatccacatc
caggaagaactgatcgaccgcttcggcaagctgcccgaggccgcgcagacgctgctcgcc
acgcaccgcctgcgcctggccgcccagcccctgggcatcgtcaagatcgacgccagcgaa
acccaggcgctgctgcaattcggccccaagacctcggtcgatcccggcaagatcatcgaa
ctcgtgcagcgccagcgtcacatcaaactggcgggacaggataaattgcgggttgagatc
aaggccgcgcagattccggcccgcgccgacgccgtgcgcgccgtgctgcgcgccttgaag
taa
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