Achromobacter sp. PD1: ACM1PE_06145
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Entry
ACM1PE_06145 CDS
T11306
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
acpd Achromobacter sp. PD1
Pathway
acpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACM1PE_06145 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acpd03021
]
ACM1PE_06145 (rho)
03019 Messenger RNA biogenesis [BR:
acpd03019
]
ACM1PE_06145 (rho)
Transcription machinery [BR:
acpd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACM1PE_06145 (rho)
Messenger RNA biogenesis [BR:
acpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACM1PE_06145 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XPR19338
LinkDB
All DBs
Position
complement(1334209..1335468)
Genome browser
AA seq
419 aa
AA seq
DB search
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GVAPEAIKHRIMFENLTPLHPNRNIRLERDIKSEENLTGRILDVFAPIGMGQRGLIVASP
KSGKTVMMQHIAHAITTNYPDAVMIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINL
NKSGTRREELLIAPDLLQKVWVLRKFIHDMDEVQSMEFILDKMRATKTNAEFFDMMKKK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaacgaactgaaggcgctgcacgtctcgcagctgctggaaatggccgccggc
ctggaaatcgagaacgccaaccgcctgcgcaagcaggaactgatgttcgccatcatgaaa
cggcgcgccaagcaaggcgagcagatcttcggcgacggcgtcctggaagtcctgcccgac
ggcttcggcttcctgcgctcgcccgagacctcgtatctggccagcacggacgacatctac
atctcgccctcgcagatccgccgcttcaacctgcacaccggcgactcgatcgaaggcgaa
gtgcgtacgcccaaggacggcgagcgctatttcgccctggtgaaggtggacaaggtcaac
ggcgtggcgccggaagcgatcaagcatcgcatcatgttcgaaaacctgacgccgctgcac
ccgaaccgcaacatccgcctggaacgcgacatcaagagcgaggaaaacctcaccggccgc
attctcgacgtcttcgcccccatcggcatgggccagcgcggcctgatcgtcgccagcccc
aagtccggcaagacggtgatgatgcagcacatcgcgcacgccatcaccaccaactatccc
gacgcggtcatgatcgtcctgctggtggacgaacgccccgaggaagtgaccgaaatgcag
cgcacggtgcgcggcgaagtggtggcctcgaccttcgacgagcccgccacccgccacgtg
caggtcgcggaaatggtcatcgaaaaggccaagcgcctggtcgaaatgaagaaggacgtc
gtgatcctgctggactcgatcacccgtctggcccgcgcctacaacaccgtggtgccggcc
tccggcaaggtgctgaccggcggcgtggacgccaacgccctgcaacgccccaagcgcttc
ttcggcgcggcccgcaacctggaagaaggcggttcgctgaccatcctgggtacggcgctg
atcgaaaccggcagccgcatggatgaagtcatctatgaagaattcaagggcaccggcaac
tccgaagtccacctcgaacgccgcctggccgaaaagcgcgtctacccgtcgatcaacctg
aacaagtccggcactcgccgcgaagagctgctgatcgctccggacctgctgcagaaggtc
tgggtgctgcgcaagttcatccacgacatggacgaagtccagtccatggaattcatcctg
gacaagatgcgcgccaccaagaccaacgccgaattcttcgacatgatgaagaagaagtaa
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