Achromobacter sp. PD1: ACM1PE_08550
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Entry
ACM1PE_08550 CDS
T11306
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
acpd Achromobacter sp. PD1
Pathway
acpd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
acpd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACM1PE_08550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acpd03021
]
ACM1PE_08550
Transcription machinery [BR:
acpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACM1PE_08550
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_ECF
Sigma70_r2
Sigma70_r4
DUF8048
HTH_23
PhyR_sigma-like
HTH_28
HTH_11
HTH_Tnp_ISL3
YmgD
HTH_24
Motif
Other DBs
NCBI-ProteinID:
XPR19798
LinkDB
All DBs
Position
complement(1819505..1820017)
Genome browser
AA seq
170 aa
AA seq
DB search
MPPADFASSDDFVSLYREHHGWLVQMLRRRLSGNTENAADLAHDTFERVMRSESRAAFAE
PRGFLTTVAKRLLIDQSRRRAVEQAYLETLASRNEAVEPSPETHALVMEALNAVCRMLEQ
LPPRARRVFVLAQLEGLPYRDIARQLDISVAAVQRDIVKAWEHCYAVLYA
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
ttgccccccgccgactttgcctcctccgacgatttcgtcagcctgtatcgagagcatcac
ggctggctcgtgcaaatgctgcgccgccggctcagcggcaataccgaaaacgccgcggat
ctggcgcacgacaccttcgaacgcgtcatgcgcagcgagtcgcgcgcggcgtttgccgag
ccgcgcggctttctcaccaccgtcgccaagcgtcttctgatcgaccagtcgcgccgccgc
gccgtggaacaggcctatctggaaacgctggcatcgcgcaacgaggccgtcgagcccagc
cccgaaacgcacgcgctggtgatggaagcgctgaacgccgtatgccgcatgctggagcag
ttgccgccacgggcgcgccgggtcttcgtgctggcgcagctggaaggcctgccctaccgc
gacatcgcccggcaactcgatatttcggtggcggccgtgcagcgcgacatcgtcaaggcc
tgggagcattgctacgcggtgctgtacgcatga
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