Achromobacter sp. PD1: ACM1PE_28330
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Entry
ACM1PE_28330 CDS
T11306
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
acpd Achromobacter sp. PD1
Pathway
acpd02020
Two-component system
acpd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acpd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ACM1PE_28330 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACM1PE_28330 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acpd03021
]
ACM1PE_28330 (rpoN)
Transcription machinery [BR:
acpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACM1PE_28330 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
XPR17280
LinkDB
All DBs
Position
complement(6020129..6021574)
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AA seq
481 aa
AA seq
DB search
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLAENPLLERQDEA
PSAEAPAESDRESSVQDDEPAAERETPVDEMPGSGGVYPDEDSSRPEAARPDTLREHLLG
QLMLTRAAPRDAALAGLLIDELDENGYLGSPLEEILDWLPPELEPDIDELKAALSLLQSF
DPPGIGARDMAECLLLQLRNPDLDRLPEAADAAVLACARQICAQHLALLATGNAARLCAA
VGCDEATFRSAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRGGWQVTLNSAAVPKLQ
INGLYAQMLGNQKESAHAGLQSQLQQARWMIRNVEQRFDTILRVAQAIVQHQTAFFSQGP
AAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELKRFFGTGVSTDGGDATSATA
VQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgtacctatgacccgtccaattttagaactgcgaccaggtcagcatttg
acgctgacgccacaactacagcaatcgatccgattgttgcagctgtccacgctcgacctc
gaagccgagatttcgcaggtgctggcggagaacccgctgctggagcggcaggacgaagcg
ccgtcggccgaggcgccggccgagtccgaccgcgaatcctcggtgcaggatgacgagccc
gccgccgaacgcgagacgccggtggacgaaatgccgggctcgggcggggtctaccccgac
gaagattccagccgccccgaggccgcccggccggatacgctgcgcgaacatctgctgggc
cagctgatgctgacgcgcgccgcgccgcgcgacgctgcgctggccggcctcctgatcgat
gagctggacgaaaacggctacctgggatcgccgctggaggaaatcctggactggttgcca
cccgaactggaaccggacatcgacgagctgaaggcggccctgtcgctgttgcagtcgttc
gatccgcccggcataggcgcgcgcgacatggcggaatgcctgttgttgcagctacgcaac
ccggatctggatcggctgcccgaagcggcggacgccgcggtcctggcttgtgcccgccag
atctgcgcgcagcacctcgcgctgctggcgacgggcaatgccgcgcgcctgtgcgcggcc
gtgggctgcgatgaggccacgttccgctcggcccatgccctcatcctgcgcctggagccc
cgccccgggcgtgcctggaccgtgcccgcggccgactacgcggtgccggacgtcatcgtg
cgcaagacgcgcggcggctggcaggtcaccctcaacagcgccgccgtgcccaagctgcag
atcaacgggctgtacgcccagatgctgggcaaccagaaggaatccgcgcatgcggggctg
caatcgcagctgcagcaggcccgttggatgatccgcaacgtggagcagcgcttcgacacc
atcctgcgcgtggcccaagccatcgtgcagcaccagacggccttcttcagccaggggccg
gccgccatgcggcctctcatcctgaaggacatcgccggtgagctcggtttgcacgaatcc
accatttcacgggccacaacacaaaagtacatgctcactccgtttggcacgctggagctc
aagcgcttctttggtacgggggtttcgacggatggcggggatgccacctcggccacggcg
gtgcagaccttcatccgccagatggtggccgaagagaaccgggccaagcctttgtccgac
agccagatcatgcaaaagctggctgatcaggggatagtcatcgcccgaaggacggtggca
aagtaccgggaagcgctgcggatcgccccggcggcgttgcgcaaggcgcaggcggcagcc
cgctga
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integrated database retrieval system
