Actinomyces sp. oral taxon 414: AM609_11245
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Entry
AM609_11245 CDS
T04083
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acq
Actinomyces sp. oral taxon 414
Pathway
acq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AM609_11245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acq03400
]
AM609_11245
Enzymes [BR:
acq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AM609_11245
DNA repair and recombination proteins [BR:
acq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AM609_11245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
RecG_dom3_C
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
ALC99895
UniProt:
A0A0M4H767
LinkDB
All DBs
Position
complement(2776822..2780511)
Genome browser
AA seq
1229 aa
AA seq
DB search
MRLTALLPPLLTDPVIADLVADAGRRRRTDRAVVVAAGARPAVLAAMAYGEEGAAGTGAT
GGTPLLVVTATTRGAEALAAALTCYAPAADVAVFPAWETLPHERLSPRADTVAARLAVLR
RLAHPEDADPGPGRPADPSRGPIRILITPVRALLAPVIEGLGELEPVRLAAGLDVGLEAT
VARLADAAYTRVDMVENRGEFAVRGGILDVFPPTLARPVRVDFFGDEIESVSSFAVADQR
TIEEVGAVTATACRELLLTDAVRSRARELAGSIPGAADMLGRIAEGIGCEGMESLAPVLA
GRMVPLLDLVGDRLVVALEPERLRRRAEDLVATTAEFLAAAWTSAASGGRAPVDLSAAAF
APLGQTRDLALSTGRGWWDFTSLKAGPDALELPLRDPRGYAGRLDEAVADLGALARAGWS
VVVATDGPGPGRRMASLLSDGGVPARIVTRLDEPADLGEVAADGTLSGDGVVRVTRAGAG
HGFIAEGLRLALIAESDLTGRAGAAPRERKALPARRARRSVDPLSLRPGDLVVHAQHGVG
RFVELLRRRVGGGRSAATREYVVIEYAPSRRGQPGDRLLVPTDALDQVSKYVGGDAPALN
RMGGADWARTKSRARRAVREIAGELVRLYAARAAATGHAFGPDTPWQSELEESFPYTETP
DQLVTIDEVKADMERSRPMDRLICGDVGYGKTEIAVRAAFKAVADGKQVAVLAPTTLLVS
QHTETFTERYAGFPVRVAQLSRFQDAAASAQVLAGLADGSVDVVIGTHRLITGRVRFKDL
GLVIIDEEQRFGVEHKETLKALRTDVDVLAMSATPIPRTLEMAVTGLREMSTLATPPEDR
HPILTYVGAYEEGQVRAAVRRELLREGQVFYVHNRVEDIDAVASRLAETVPEARVAVAHG
QMGESRLERIIDDFWRKKIDVLVCTTIVETGLDVTDANTLIVDRADRMGLSQLHQLRGRV
GRGRERAYAYFLHPADRPLTETALERLRTIAANTDLGAGMQVAMKDLEIRGAGNLLGGEQ
SGHIAGVGFDLYVRMVAEAVTAYKKALKAGGDDGDGGTEAQIDQDLRVELPVDATIPEDY
VPHERLRLEAYTKFAAARSDADVEDVLDELADRYGAVPEPVRRLAALARLRALAARLGVR
EIVAQGKSVRLAPVELAESGRLRLTRLYPGTTLKPATRTIVVPAPGAARMGAGPVEGEAL
LRWAEVLLRAVVEGDPAYETEATAYRRRR
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtctgaccgccctcctgcccccgctgctcaccgaccccgtcattgccgacctcgtc
gccgacgccggccgccgccggcgcaccgaccgcgccgtcgtcgtcgccgccggagcccgg
cccgccgtcctggcggccatggcctacggagaggagggggccgccggcaccggggcgacc
ggcggcactccgctgctcgtggtgaccgccaccacccgcggggccgaggccctggccgcc
gccctgacctgctacgcgcccgcggccgacgtcgccgtcttccccgcctgggagaccctc
ccgcatgagcggctctccccgcgcgccgacacggtggccgcccgcctggcggtcctgcga
cgcctggcccaccccgaggacgccgatcccggccccggccgccccgccgacccctcccgc
ggccccatccgcattctcatcacccccgtgcgggccctgctggcccccgtcatcgagggc
ctgggcgagctcgagcccgtccgcctcgccgccggcctggacgtcgggctcgaggccacc
gtcgcccgcctggccgacgccgcctacacgagggtggacatggtggagaatcgcggcgag
ttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccctggcccgcccggtgcgc
gtggacttcttcggcgacgagatcgagtcggtctcctccttcgccgtcgccgaccagcgc
accatcgaggaggtcggcgccgtcaccgccaccgcctgccgcgagctgctgctcaccgac
gccgtgcgctcccgggcccgggaactggccggctccatccccggcgccgccgacatgctg
ggcaggatcgccgaggggatcgggtgcgagggcatggagtccctcgcccccgtcctggcc
gggcgcatggtgccgctgctcgacctggtcggcgatcgcctcgtcgtggccctggagccc
gagcgcttgcgtcggcgcgccgaggacctcgtggccacgaccgccgaattcctcgccgcc
gcctggacctcggccgcctccgggggccgggcccccgtggacctgtccgccgccgccttc
gcccccctcgggcagacccgcgacctggccctgtccaccggccgcggctggtgggacttc
acctccctcaaggccggcccggacgcgctcgaactgcccctgcgggacccgcgcggctac
gccggccggctcgacgaggccgtcgccgacctgggggccctggcgcgcgcgggctggagc
gtcgtcgtcgccaccgacgggcccggccccggcaggcgcatggcctccctgctgtccgac
ggcggcgtgcccgcccgcatagtcacccgcctggacgagcccgccgacctgggcgaagtc
gccgccgacgggaccctgagcggcgacggcgtcgtgcgtgtcacccgggccggcgccggc
cacggtttcatcgccgagggactgcgcctggccctcatcgccgagtccgacctgaccggg
cgggccggcgccgccccccgcgagcgcaaggccctgcccgcccgccgcgcccgccgcagc
gtcgacccgctctcgctgcgccccggcgacctcgtcgtccacgcccagcacggcgtgggg
cgtttcgtcgagctcctgcgccggagggtcggcggcgggcggagcgccgccacccgcgag
tacgtcgtcatcgagtacgccccctcccggcgcggccagcccggtgaccggctcctggtg
cccaccgacgccctggaccaggtgtccaagtacgtcggcggcgacgcccccgccctgaac
cggatgggcggggcggactgggcccggaccaagtccagggcccggcgggccgtgcgggag
atcgccggggagctcgtgcgcctttacgccgcccgcgccgccgccaccggccacgccttc
ggccccgacacgccctggcagtccgagctggaggagtccttcccctacaccgagaccccc
gaccagctggtgaccattgacgaggtcaaggcggacatggagcggtcccggcccatggac
cggctcatctgcggcgacgtgggctacggcaagaccgagatcgccgtgcgcgccgccttc
aaggcggtggccgacggcaagcaggtcgccgtcctggcgcccaccaccctgctcgtgagc
cagcacaccgagaccttcaccgagcgctacgccggtttccccgtgcgggtggcccagctc
tcccgcttccaggacgccgccgcctccgcccaggttctggcgggcctggccgacgggagc
gtcgacgtcgtcatcggcacgcaccgcctgatcaccgggcgggtgcgcttcaaggacctg
gggctggtcattatcgacgaggagcagcgcttcggggtggagcacaaggagactctcaag
gccctgcgcaccgacgtcgatgtcctggccatgtcggccacgcccattccacgcaccctg
gagatggcggtgaccggcctgcgggagatgtccaccctggccaccccgcccgaggaccgc
caccccatcctcacttacgtgggcgcctacgaggaggggcaggtccgcgccgccgtccgc
cgcgagctgctgcgcgagggtcaggtcttctacgtccacaaccgggtggaggacattgac
gccgtcgcctcccgcctggccgagacggtgcccgaggcgagggtcgccgtcgcccacggg
cagatgggcgagtcgcgcctggagaggatcattgacgacttctggcgcaagaagatcgat
gtgctggtgtgcaccacgattgtggagaccggcctggacgtgacggacgccaacaccctc
attgtcgaccgggccgaccgcatggggctgagccagctccaccagttgcgcgggcgcgtg
ggccgcgggcgcgagcgcgcctacgcctacttcctgcacccggccgacaggcccctgacc
gagaccgccctggagcggctgcgcaccattgccgccaataccgacctgggggcgggcatg
caggtggccatgaaagacctggagatccgcggtgctggcaatctgttgggcggggagcag
tccgggcacatcgccggggtcggcttcgacctgtacgtgcgtatggtcgccgaggccgtg
accgcctacaaaaaggccctcaaggccgggggcgatgacggtgacggcgggaccgaggcg
cagatcgaccaggacctgcgcgtcgagctgcccgtggacgccaccatccccgaggattac
gtgccccacgagcgcctgcgcctggaggcctacaccaagttcgccgccgcgcgcagcgac
gccgatgtcgaggacgtgctcgacgagctcgccgaccgctacggggccgtgcccgagccg
gtccggcgcttggcggccctggcgcggctgcgggcgctggcggcccgcctgggggtgcgc
gagatcgtcgcccagggcaagtcggtgcgcctggccccggtggagctggccgagtcgggg
cggctgcgtctgacgcgcctgtacccggggaccacgctcaagccggcgacccgcacgatc
gtggtgcccgcgcccggggccgcccgtatgggcgccgggccggtggagggcgaggcgctg
ctgcgctgggccgaggtgctcctgcgcgccgtcgtcgagggcgatcccgcctatgagacg
gaagccaccgcctaccggcgtcgccgctga
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