Acidovorax sp. RAC01: BSY15_2796
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Entry
BSY15_2796 CDS
T04481
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
acra
Acidovorax sp. RAC01
Pathway
acra02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acra00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BSY15_2796 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acra03021
]
BSY15_2796 (rpoD)
Transcription machinery [BR:
acra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BSY15_2796 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
MscS_porin
DUF6522
Motif
Other DBs
NCBI-ProteinID:
AOG22789
LinkDB
All DBs
Position
complement(3115281..3117656)
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AA seq
791 aa
AA seq
DB search
MPAQKSAKPLKSTPGTAAKAVSTPAAKASAKAAPKKAAPAPAAAAKKVKTVSVKSSAELT
KAADELLKKKPARAKAVAVPDEEEAPKKKPGRPAKAAAATGEAKVPAKRGRKPKAAAGDD
VSSDDADLSDIEADLEGEVEETTEVAATVEKVKPLRMKISKAKERALMKEFGLDETVLSE
EDMQKRRQRLKALIKLGKTRGYLTHVEINDHLPDKLVDAETLEAVITTLNDLGVAVYEQT
PDAEALIITDNAPAGATEEEAEEAAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREG
EIEIAKRIEGGLMAMMEAISASPATIAEILNMGEDIREGKVVISTIVDGFSNPNEADDYV
AEEDFDEFDEADDDDGKGGSKALTKKLEELKKQALERFDKLRELFEKVHKVYDKEGYGTP
AYVKAQQALSAELMTIRFTAKTIEKLCDMVRGQVDDVRKKERELRRIIVDKCGMPQETFI
KDFPPNLLNQKWVEKQAAAGKPWSTVMARNIPPIQELQQKLTDLQARVVVPLAQLKDINK
RMNEGEATSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASIL
AAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGANTAPIEAAMQAGLRDV
VKDILDGLTPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSR
SDKLRSFIDSL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctcaaaagtccgcgaagccgctcaagtcaaccccgggaaccgccgccaaggct
gtgtccacccctgctgccaaggcctctgccaaggccgcccccaaaaaggccgcgcctgcg
cccgctgcagcagccaagaaagtcaaaaccgtgtccgtgaaaagttctgccgagctgacc
aaagctgccgatgaattgctgaagaaaaagcccgcccgtgccaaggcagtggctgtgcct
gacgaagaagaagccccgaagaaaaagcctggccgcccggccaaggcagccgctgccacc
ggcgaggccaaggtgcctgccaagcgcggccgcaagcccaaggcagccgccggcgacgac
gtgagctctgacgatgccgacctgtcggacatcgaagccgacctggaaggcgaagtcgag
gaaaccaccgaggtggcggccacggtcgagaaggtcaagcccctgcgcatgaagatcagc
aaggccaaggaacgggccttgatgaaggaattcggcctggacgaaaccgtcctgtccgaa
gaagacatgcaaaagcgccgccagcgcctcaaagccctgatcaagctgggcaagacgcgc
ggctacctcacgcacgttgaaatcaacgaccacctgcccgacaagctggtcgatgccgaa
accctcgaagccgtcatcaccaccctgaacgacctgggcgtggcggtgtacgagcagacg
cctgatgccgaagcgctgatcatcacggacaacgcccccgctggcgccaccgaagaagaa
gccgaagaagccgcagaagccgcgctgtccaccgtggactcggaattcggccgcaccacg
gacccggttcgcatgtacatgcgcgaaatgggcactgtggagctgctcacgcgcgaaggc
gaaatcgaaatcgccaagcgcatcgaaggcggcctgatggccatgatggaggcgatcagc
gcatcgcccgccaccatcgccgaaatcctgaacatgggcgaggacatccgcgaaggcaag
gtcgtcatctcgaccatcgtcgacggcttctccaaccccaacgaggccgacgactatgtg
gccgaagaagactttgacgaattcgacgaagccgacgatgacgacggcaagggcggcagc
aaggccctgaccaagaagctcgaagaactgaaaaagcaggcgctggagcgctttgacaag
ctgcgcgagctgtttgaaaaagtgcacaaggtgtacgacaaggaaggctacggcacccct
gcgtatgtgaaggcccagcaggccctgtcggccgagctgatgaccatccgcttcaccgcc
aagaccatcgagaagctgtgcgacatggtgcgcggccaggtggacgacgtgcgcaagaaa
gagcgcgagctgcgccgcatcatcgtggacaagtgcggcatgccccaggaaaccttcatc
aaggatttcccgccaaacctgctcaaccagaaatgggtcgagaagcaggccgctgccggc
aagccctggagcacggtgatggcgcgcaacattccgcccatccaggaactgcagcaaaag
ctgaccgacctgcaggcgcgcgtggtggtacccctggcccagctcaaggacatcaacaag
cgcatgaacgaaggcgaagccacctcgcgcgatgccaagaaggaaatgatcgaggccaac
ctgcgcctcgtgatttcgattgccaagaagtacaccaaccgcggtctgcagttcctggac
ctgatccaggaaggcaacatcggcctgatgaaggcggtggacaagttcgaataccgccgc
ggctacaagttctcgacctatgcgacgtggtggatccgccaggccatcacaaggagcatt
gccgaccaggcgcgcaccatccgcatcccggtgcacatgatcgagacgatcaacaagatg
aaccgcatcagccgccagcacctgcaggagtttggctttgagcccgatgcgtccatcctg
gctgccaagatggagatcccggaagacaagatccgcaagatcatgaagatcgccaaggaa
ccgatctcgatggaaacccccatcggcgacgacgacgacagccacctgggcgatttcatc
gaggacggtgccaacaccgcccccattgaagccgccatgcaggccggcctgcgcgacgtg
gtcaaggacatcctggacggcctcacgccgcgcgaagccaaggtgctgcgcatgcgcttc
ggtatcgagatgaccagcgaccacacgctggaagaagtgggcaagcagttcgacgtgacc
cgcgagcgcattcgccagatagaagccaaggcgcttcgcaagctcaagcacccatcgcgt
tcggacaagctgcgcagcttcatcgattcgctgtaa
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