Acidovorax sp. RAC01: BSY15_4152
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Entry
BSY15_4152 CDS
T04481
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acra
Acidovorax sp. RAC01
Pathway
acra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY15_4152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acra03019
]
BSY15_4152
Enzymes [BR:
acra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSY15_4152
Messenger RNA biogenesis [BR:
acra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSY15_4152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AOG23646
LinkDB
All DBs
Position
4561896..4563209
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AA seq
437 aa
AA seq
DB search
MPFSALGLSPALVHAASQAGFTAPTPVQAEAIPAILAGSDVRGAAQTGSGKTAAFALPLL
QQLQLSATGGPRRVRALVLVPTRELAAQVGEVLRSLGQHLQQPLKVAIVFGGVSINPQMM
GLRGGADIVVATPGRLLDLVEHNALRLGAVAHLVLDEADRLLDLGFAEELQRVLALLPAQ
RQNLFFSATFPDAVQALANSLLRNPVRVEVPHTPGNEPAIEQRAIAVDASRRTQLLRHLI
QEHGWSRVLVFVATQYAAEHVAEKLYKAGIFASPFHGGLSQGARNQVLQEFKDERWQVVV
TTDLAARGIDIAQLPAVVNYDLPRSAVDYVHRIGRTGRAGESGMAVSFVTPEAQAHFRLI
EKRQHLALPLEQLPGFEPTEAAPPPSATDPQGTGGIKGRRPSKKDKLRAAQAAAGDTGTG
APAGNGAAPAAGGNTLR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccgccctcggtctgtctcctgcccttgtccacgctgccagccaggccggc
tttacggcgcccacgccggtccaggcagaggccatcccggccatcctggcaggctcggat
gtgcggggtgcggcgcagacgggctctggcaagacggctgcctttgcgctgccgctgctg
cagcagctgcagctgagtgccaccggcgggccgcgccgcgtgcgcgccctggtgctggtg
cccacgcgcgaactggccgcccaggtgggcgaggtgctgcgcagcctgggccagcacctg
cagcagccgctgaaggtggccatcgtcttcggcggcgtctcgatcaacccgcagatgatg
ggcctgcgcggcggcgccgacatcgtggtggccaccccgggccgcctgctggacctggtg
gagcacaacgccctgcggctgggcgccgtggcccacctggtgctggacgaggccgaccgc
ctgctcgacctgggctttgccgaggaactgcagcgcgtgctggccctgctgcccgcgcaa
cggcagaacctgtttttctccgccaccttccctgacgccgtgcaggccctggccaacagc
ctgctgcgcaaccccgtgcgcgtggaagtgccgcacacgcccggcaacgagcccgccatc
gaacagcgcgccatcgccgtggacgccagccggcgcacgcagctgctgcgccacctgatc
caggagcacggctggtcgcgcgtgctggtgtttgtggccacgcagtacgcggccgagcat
gtggctgaaaagctctacaaggcgggcatctttgcctcgcccttccacggcggcctgagc
cagggcgcgcgcaaccaggtgctgcaggagttcaaggacgagcgctggcaggtggtggta
accaccgacctggccgcgcgcggaatcgacattgcgcaattgccggcagtggtcaactac
gacctgccccgctcggcggtggactacgtgcaccgcatcggccgcacaggccgggcgggc
gaaagcggcatggccgtgagctttgtcacgccggaggcccaggcgcactttcgcctgatt
gaaaagcgccagcatctggccctgccgctggaacagctgccggggtttgagccgaccgag
gccgcgccacccccttcggccaccgacccgcagggcaccggtggcatcaagggccgcaga
cccagcaagaaggacaagctgcgggcagcgcaggccgcagcgggcgacaccggcacgggc
gcccctgccggcaacggggctgcgccagcggcaggcggcaacaccctccgctga
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