Aliiroseovarius crassostreae: K3J57_05940
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Entry
K3J57_05940 CDS
T08444
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
acro
Aliiroseovarius crassostreae
Brite
KEGG Orthology (KO) [BR:
acro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acro03016
]
K3J57_05940 (rnd)
Enzymes [BR:
acro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
K3J57_05940 (rnd)
Transfer RNA biogenesis [BR:
acro03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K3J57_05940 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UWP90206
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All DBs
Position
1242761..1243921
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AA seq
386 aa
AA seq
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MITITTTDALAEFCARAAQHPYVTVDTEFLRERTYYSKLCLVQMAVPGDAEEDAVLVDPL
VDGLSLEPMYELFRDERVVKVFHAARQDLEIFFVEAGVFPKPLFDTQVAAMVCGFGDQVG
YETLVRKIAKAQLDKSSRFTDWSRRPLTAAQQNYAIGDVTHLRVIYEWLAKELEKSGRGA
WVEEELSVLTDPATYTIHPEDAWQRVKTRTNSGRFLGIVRELARFRESYAQSRNIPRNRV
MKDDALLELASTKPANIQDLGRSRLLLREARKGEIADGILKAVADGLACPQENLPKVTDK
SKEKLQVNPALADLLRVLLKARCEQEKVAQKLIASAADLDALAAGKRNVQALKGWRAQVF
GSDAVRLCDGKLALAAKGQRVEVFEV
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgataacgatcaccaccaccgacgccctggccgaattctgtgcgcgggccgcgcagcat
ccttatgtcacggtggataccgaatttctgcgcgaacgcacctattattccaagctgtgc
cttgtgcagatggcggtgcccggtgacgcggaagaggatgcggtgctggtggatccgctg
gtggacggtttgtcgctggaaccgatgtatgagctgttccgcgatgaacgggtggtgaaa
gtattccacgcagcccggcaggacctcgaaatcttttttgttgaggccggcgtctttcca
aaaccgctgttcgacacgcaagtcgcggccatggtctgtggcttcggggatcaggtggga
tatgaaacgcttgtgcgcaaaattgccaaggcgcagctggacaagtccagccgttttacc
gattggtcacgccgcccgctgaccgcggcgcaacagaattacgcgatcggtgatgtgacc
catttgcgggtgatctatgaatggcttgccaaagagctggaaaaatccggtcgtggcgcc
tgggttgaagaggagctgtcggttctgaccgatcccgcgacctataccatccacccggaa
gatgcctggcagcgcgtgaaaacccgcaccaattcggggcgttttctggggatcgtgcgg
gaacttgcccggttccgggaatcctacgctcagtcccgaaatatcccgcgcaaccgggtg
atgaaagatgacgcgctgctggagctggcgtcgacaaagcctgcgaatattcaggatctc
ggccggtcgcgcctgttgctgcgcgaggcccgcaaaggcgagatcgcggatgggatcctc
aaggccgtggcggacgggctggcctgcccgcaggaaaacctgccgaaagttaccgacaag
tccaaggaaaaactgcaggtcaaccccgcgctggccgaccttctgcgcgtgcttctgaaa
gcacgctgcgaacaggagaaagtggcgcagaaactgatcgcctctgccgcagaccttgat
gcgcttgcggcaggcaaacggaatgtgcaggcgttgaagggctggcgcgcgcaggtgttt
ggcagcgatgctgtgcgcctgtgtgatggaaaactcgcgcttgccgcgaaaggtcagcgc
gtcgaagtattcgaggtctga
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