Aliiroseovarius crassostreae: K3J57_07985
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Entry
K3J57_07985 CDS
T08444
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acro
Aliiroseovarius crassostreae
Pathway
acro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3J57_07985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acro03019
]
K3J57_07985
03009 Ribosome biogenesis [BR:
acro03009
]
K3J57_07985
Enzymes [BR:
acro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K3J57_07985
Messenger RNA biogenesis [BR:
acro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3J57_07985
Ribosome biogenesis [BR:
acro03009
]
Prokaryotic type
rRNA processing factors
K3J57_07985
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UWP87884
LinkDB
All DBs
Position
complement(1683437..1686529)
Genome browser
AA seq
1030 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALLEEERAYAEAQAAEDEKPKSRRRRRSKSKPK
AEETKSADAVATKEVETPSETPVESSASGMDVIDLDQGGADTLEGHSPMDLVDETPVAEP
AEDATDAPAAETPVETSAQEGADAGDVAEKAAENQAADLANDAQDADHADDGNGDDDGDE
DDPLEADEKDDQIERVADDDSSEDIRPRRKPRQKRYKIQEVVKVRQIMLVQVVKEERGNK
GAALTTYLSLAGRYCVLMPNTARGGGISRKITNATDRKKLKEIATEIDVPQGAGLIIRTA
GAKRTKTEIKRDYEYLQRLWEQIRTHTLESVAPAKIYEEGNLIKRTIRDLYSREIDEVFV
EGAAGYRTAKDFMKMIMPSHAKNVKHYQDQMPLFARYQVESYLSGMFNPTVQLKSGGYIV
IGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDE
RRNNTAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCNHCHGTGL
IRSDDNLALNILRQLEEEGVRRRSREVLVKAPVGIVNFLMNNKREHIAQIEARYGMAVRI
EADPFLISPDFAIEKFKTATRVVPEAAALVSADASLMSEIDEVEEAEVISEDAPAEASTP
SGDEEQKPKKRRRRRRRRRSSSSENGENGENGENGESTDGSDENADGADVAEAAKASDGE
APGDAASEGADTGGDASPAEAADEAEKDAAKPQKTSSKSTSKTTRKSSTTKKSSTSKKKA
AAPETGGETVEEAGEERAENASDAVSPAEDKPKKVTRKSSSTRKKSSSSKAKKEAEVASS
EQGADAVTGEAIEAASDAPAEGDVKPKKTTRKRSTSTSKKKAAEVVEPAPESAEQETSAE
AVVAAEPVSDTVEPTPAPADEAVAETPSEEASVAPSEPVADPVTEEVSTTAVKEDTPPKP
KRKGWWSLGQ
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaagatgcttatcgacgccacccacgcggaggaaacccgcgttgttgtggtc
gacggcaacaaggtcgaggaatttgactttgaatcggaaaacaaacgtcagctagctggc
aatatctatctggccaaggtgacgcgggttgaaccctcgttgcaggcggcctttgtggat
tatggcggaaaccgtcatggtttcctggcgttttcggaaattcacccggattattaccag
atcccggttgcggatcgtcaggcgctgttggaagaagaacgcgcctatgccgaggcgcag
gctgcggaagacgaaaagcccaaatcgcgccgccgccgccgctccaaatccaaacccaaa
gcggaagagaccaaatcggcagatgcggtggcaaccaaagaggtggaaacaccttctgag
acgccggtggaaagctcggcgtccggcatggacgtgatcgacctggatcaaggtggcgcg
gacacgcttgaaggtcactcgccgatggatctggtcgatgagaccccggttgcggaaccg
gcagaggatgcaacggacgcgccggcggcagagaccccggtggagacatctgctcaagag
ggggcggatgctggtgatgtggctgaaaaagctgccgaaaatcaggccgctgaccttgcc
aatgatgcgcaagacgccgaccatgctgatgatggcaatggcgacgatgacggcgacgaa
gacgatccgctcgaagccgacgaaaaagacgatcagatcgaacgtgttgcggatgatgac
agttcagaagacatccgtccgcgccgcaaaccgcgccagaaacgttacaagatccaggaa
gtggtcaaggtgcgccagatcatgctggtgcaggttgtgaaagaggaacgtggcaacaag
ggggccgcgctcaccacctatctgtctctggcaggtcgttactgcgtcttgatgcccaat
accgcgcgcggtgggggcatttcgcgcaagatcaccaacgccaccgaccgcaagaaactc
aaggaaatcgccactgagatcgacgtgccgcagggcgcgggcctgatcatccgcaccgcg
ggcgccaagcgcaccaagaccgagatcaagcgcgattatgaatatctgcaacgcctgtgg
gagcagatccgcacccacacgctggaaagcgttgccccggccaagatctatgaagaaggc
aacctgatcaaacgcacgatccgcgacctttattcgcgtgagatcgacgaggtgtttgtt
gaaggcgccgctggctatcgcaccgcgaaggacttcatgaaaatgatcatgccgtcccac
gcgaaaaacgtgaaacactaccaggatcagatgccgctctttgcgcggtatcaggtggaa
agctacctctcgggcatgttcaacccgacggtgcagctgaaatccggtggctatatcgtg
atcggtgtgaccgaagctctggtggcgattgatgtgaactctggtcgggccaccaaggaa
ggctcgatcgaggaaaccgcgctcaagaccaacctggaagccgccgaagaggtggcgcgc
cagctgcgtctgcgcgaccttgccgggctgattgtgatcgacttcatcgacatggatgaa
cgtcgcaacaacacggccgtcgaaaagcggatgaaagacaagctcaagaccgatcgcgcg
cgcattcaggtgggccgtatctcgggctttggtctgatggaaatgtcgcgccagcgtctg
cgccccggcatgatcgaggccacgacccagccgtgtaaccattgccacggcaccggtctg
atccggtccgacgacaatctggccctcaatatcctgcgtcagctggaagaagaaggcgtg
cgtcgtcgctcacgtgaggtgctggtgaaagcaccggttggtatcgtcaatttcctgatg
aacaacaagcgtgaacatatcgcccagatcgaagcgcgctatggcatggcggtgcggatc
gaagccgatccgttcctgatttcgcccgatttcgccatcgagaagttcaagaccgccacc
cgcgtggtgccggaagcggctgcgctggtatcggcggatgcctcactgatgagtgagatt
gacgaggtggaagaggccgaggtgatttccgaggacgcgccggcagaggcttcgaccccc
tcaggggatgaggagcaaaagcccaagaagcgtcgtcgtcgtcgtcgtcgccgtcgcagc
tccagttccgaaaatggcgagaacggtgagaacggcgaaaacggagagtccaccgacggt
tcggatgagaacgctgacggggcagacgtggctgaggcagcaaaggcatcggacggcgaa
gcgccaggtgacgcggccagtgagggtgcggataccggcggggatgcatcccctgctgag
gcggctgacgaggcagaaaaagacgctgccaagccgcagaaaaccagcagcaaatccacc
agcaagacgaccaggaaaagctcaaccaccaagaaaagctcgaccagcaagaagaaagct
gctgcgcccgagacagggggggagactgtggaagaagctggggaagagcgcgcggaaaac
gcctctgacgctgtgtcgcctgcggaagacaagcccaagaaagtcacgcgaaaaagcagc
tcaacccggaaaaagtcgagcagctccaaggcaaagaaagaggccgaggtcgcctcttct
gagcagggtgctgatgcggtgacaggcgaggccattgaggcggcgagcgatgcacctgcc
gaaggtgacgtgaagccgaagaagaccacgcgcaaacgctcgacttcgaccagcaagaaa
aaagcggcagaagtcgtggaacctgcgcctgaaagtgccgagcaagaaacctcggcagag
gcggtggttgcagcagagccggtgagcgacaccgtggagcccacacccgcacccgcggac
gaggcggtcgcagaaacgccgtctgaagaggcgagcgtagccccctcagagcccgtggca
gatcctgtgacggaagaggtgtcaacgaccgctgtaaaagaggacacgccccccaagccc
aaacgcaaaggctggtggtcgctgggccagtaa
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