Aliiroseovarius crassostreae: K3J57_08155
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Entry
K3J57_08155 CDS
T08444
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
acro
Aliiroseovarius crassostreae
Pathway
acro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
acro00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K3J57_08155 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acro03021
]
K3J57_08155 (rpoD)
Transcription machinery [BR:
acro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K3J57_08155 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
Motif
Other DBs
NCBI-ProteinID:
UWP87915
LinkDB
All DBs
Position
complement(1719732..1721714)
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AA seq
660 aa
AA seq
DB search
MAAKDTASDRKDDQDAEPIGDMSQAAVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIE
DVMSMLSEMGINIIEDEEAEEEEKNAGELVVKNAGGEVAVATAETEKLDRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LDATFGNQLDDDEEEETVLGGTGSEAPKTEKKEKEQELDADGNPLNNDDDDDEDEAANMS
LAAMEAALKPRVLETLELIARDYAELSEMQDLRMSATLNEDDSFTDKEESAYQKLRSEIV
LLVNELHLHNNRIEALIDQLYGINRRIMSIDSSMVKLADQARINRREFIDAYRGRELDPT
WFDDMTQKSGRGWQMFIEKSADKVEKLRGDMAQVGQYVGVDIPEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagacaccgcatcggaccgcaaggacgatcaggacgccgaaccgatcggc
gatatgagccaagccgccgtcaagaagatgatcgcggaagctcgggaaaaaggctacatc
acctacgatcagctcaaccaggttctgccgcccgatcaggtcagctcggaacagatcgag
gacgtgatgtcgatgctgtccgagatgggcatcaacatcatcgaagatgaagaggcggaa
gaagaagagaaaaacgccggcgaactggtcgtgaaaaacgcgggcggcgaggtggcagtg
gccaccgccgagaccgaaaagctcgaccgcaccgacgatcctgtgcgcatgtatctgcgt
gaaatgggctcggttgagctgttgtcgcgtgaaggcgagatcgcgattgccaagcggatc
gaagcagggcgcaacacgatgatcgcggggctttgcgaaagcccgctgaccttccaggcg
atcacgatctggcgcgacgaacttctgtccgaagacattcttctgcgcgatgtgatcgac
cttgatgccacctttggcaaccagctggatgatgacgaggaagaggaaaccgtgctgggg
ggcacggggtctgaagcgccgaagactgaaaaaaaggaaaaagaacaagagcttgacgcg
gatggcaatccgctgaacaacgatgacgatgatgacgaggacgaagccgccaacatgtcg
cttgccgcgatggaggccgctctcaaacctcgcgttctggaaacgcttgagctgatcgcc
cgtgattacgcggagctgagtgaaatgcaggacctgcgcatgagcgcaaccctgaacgaa
gatgacagtttcaccgataaggaagagagcgcctatcagaagctgcgctcggaaattgtt
ctgctggtgaatgagctgcacctgcacaacaaccggatcgaggcgctgatcgaccagctt
tacggcatcaaccgccggatcatgtcgatcgactcctccatggtgaagctggccgatcag
gcgcggatcaaccgccgcgaattcatcgatgcctatcgcggccgtgaactcgacccgacc
tggtttgacgacatgacccagaaatccgggcgtggctggcagatgttcatcgagaaatcc
gccgacaaggtggaaaaactgcgcggtgacatggcgcaggtcggccaatatgtcggcgtc
gacatcccggaattccgccgcatcgtgcagcaggttcagaagggtgaaaaagaggcccgt
caggccaagaaggaaatggttgaagccaaccttcgcctggtgatctcgatcgcgaaaaaa
tacaccaaccgcgggctgcaattccttgatcttattcaggaaggtaatattggcctgatg
aaggcggtggacaagttcgaatatcgtcgcggctacaaattctcgacctatgcgacctgg
tggatccgtcaggcgatcacgcgctcgatcgcggatcaggcccgcaccatccgtatcccg
gtgcatatgatcgagacgatcaacaagctggtgcgcaccggtcgccagatgctgcacgaa
attggccgcgagccgaccccggaagaactggccgaaaagctgcagatgccgcttgagaag
gtccgcaaggtgatgaagatcgccaaggagccgatctctcttgagacgccaatcggcgat
gaggaagacagccagctgggggatttcatcgaggacaagaatgccgtgctgcccttggac
agcgccattcaggagaacctcaaggaaaccacaacccgcgttctggcctcgctcactccg
cgcgaagaacgtgtgctgcggatgcggtttggtatcggcatgaacaccgaccatacactc
gaagaggtgggtcaacagttcagcgtgacccgtgaacggatccgtcagatcgaggcaaag
gcgctcagaaaactgaagcaccccagccgctcgcgcaaactgcgcagcttcctggaccag
tga
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