Aliiroseovarius crassostreae: K3J57_11240
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Entry
K3J57_11240 CDS
T08444
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
acro
Aliiroseovarius crassostreae
Brite
KEGG Orthology (KO) [BR:
acro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acro03019
]
K3J57_11240 (hrpB)
Enzymes [BR:
acro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K3J57_11240 (hrpB)
Messenger RNA biogenesis [BR:
acro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K3J57_11240 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
HA2_N
ResIII
AAA_19
AAA_30
Herpes_TK_C
Motif
Other DBs
NCBI-ProteinID:
UWP88465
LinkDB
All DBs
Position
2356525..2358975
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AA seq
816 aa
AA seq
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MTDQLPIHDALPDLLTALHDTGRAVLMAPPGAGKTTVVPLKMLAAGAFDGRLIMLEPRRL
AARTAAERMAQTLGEPVGQTVGYRIRGEVKTSKATRIEVVTEGILTRMLQSDPSLEGVGA
VIFDEFHERSLVADLGLALTWEAMGALRDNLKLVVMSATLDAEPVARLLEDAPIIRSHGR
AFPVETRHLDRPLAKGVRLPEATADLVLRALDETAGGVLVFLPGEGEIRRCEAALRGRLP
QDCHLHTLFGAMEFSAQRAAIQPAGAGRKIVLATAIAETSLTIQDIRVVVDAGLARRARF
DPGSGMSRLVTERVSKAEATQRQGRAGRVAEGVCYRLWTRGEEGGLPPFPPAEIETADLA
PLALELAMWGAADGSGLAFLTPPNAGVLREAQQLLRDLGALDAGGRITDHGRQLARLPMH
PRLGHMMVVAGASAAPLAALWGERDPLPRGADPDLALRLEAIRDPNGFARRRGLQANRGA
VERIRAEARRVARMVPEGPDLTEAQQTALAYPDRIGLRRPGDTPRFVLSGGKGCIMDPAT
PLANARLIVVTDTDGNPREAKIRQAIQISESELRELFADNIRWHDDCEWSRRDGRVVARR
RERLGAVVLDDRIWKDAPNEEIARAMLDGVRDLGLRLSDAAKRFVARVELLRDEGAELPD
MRENALMESLETWLLPHLSGVKTATDWKKFDALEALRARLDWPQMQMLDRLAPAHFETPL
GRKVPIDYAGDHPEIQIRLQELFGVTRHPRVGRTPLRVTLLSPGHKPVQTTLDIPGFWAS
SYADVRKDMRGRYPKHPWPEDPTQADPTLRAKPRTK
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgacggatcaactgcccattcacgacgccctgcccgatcttctcacggcccttcatgac
accgggcgcgcggtgttgatggccccaccgggggcgggtaaaaccaccgtggtgcccctg
aagatgctggcggcgggcgcttttgacgggcgactgatcatgctggagccgcgcaggctt
gcggcgcgcaccgcggccgagcgcatggcacaaacccttggggagcctgtcgggcaaacc
gtgggctatcgcattcgcggtgaagtgaaaacgtcaaaggccacgcgtatcgaggtggtg
accgaggggatcctgacccggatgttgcaatccgacccgtcccttgagggggtcggcgcc
gtgatcttcgacgagttccacgaacgttccctggtggcggatctcgggctggccctgaca
tgggaggccatgggcgcgctgcgagacaacctgaaacttgtggtcatgtccgcgacgctg
gacgccgaaccggtggcgcggctgctggaagacgcgccgatcatccgctcgcacgggcgc
gcgtttccggtcgaaacccggcatctcgaccgcccccttgccaagggcgtgcgtctcccg
gaggcaacggctgatctcgtattgcgggcccttgacgaaacagcgggcggcgtgttggtg
ttcctgcccggcgagggggaaatccggcgctgtgaagccgccctgagggggcgcctgccg
caggattgccacctccacaccctttttggcgccatggagttttcggcccagcgcgcggcc
attcaacccgcaggcgcgggacgcaagatcgtgctggcaaccgccattgccgaaacctca
ctgaccattcaggacatccgcgtggtggtcgatgcggggctggcgcgccgggcgcgattt
gatccggggtctggcatgtcacgtctggtgaccgaacgtgtctccaaggccgaagccacc
cagaggcaggggcgcgccggccgggtggcagagggggtttgctaccggttgtggacacgc
ggcgaagaaggcggactgccgccgttcccacccgctgaaatcgaaactgccgaccttgcg
ccgctggcgttggagcttgcgatgtggggggctgccgacgggtctgggctggccttcctg
accccgccaaatgccggggtcctgcgcgaagcccagcagttgctccgtgatctgggggcg
ttggatgcaggcgggcggatcaccgatcacggtcgccagcttgcgcgcctgccgatgcat
ccgcgcctcgggcatatgatggtggttgccggcgcgtccgcggcaccgctcgccgccctt
tggggggaacgggatccgctgccccgcggggcggatcccgatcttgcgctccgacttgag
gcgatccgcgaccccaacgggtttgcccggcgccgggggctgcaggccaatcggggcgcg
gttgagcgtatccgggccgaggccaggcgggtggcgcgcatggtgcccgaggggccggac
ctgactgaggcccaacagacggccctcgcctatcccgaccgcatcggcctgcgccgcccg
ggggacaccccccgttttgtcctgtccggcggcaagggctgcatcatggacccggccacc
cccctggcaaatgccaggctgatcgtcgtgaccgataccgacggcaatccgcgcgaggca
aaaatccgacaggccatccagatcagtgaaagcgaactgcgcgagctgttcgcggacaac
atccgctggcatgatgactgtgaatggtccagacgtgacggccgcgtcgtggcgcgacgc
cgggaacggctcggggccgtggtgctggacgaccggatctggaaagacgccccgaacgag
gagatcgcccgcgccatgctggacggggtgcgcgacctgggcctgcgcctgtcagatgcc
gcaaaacgtttcgtggcgcgggttgagctcttgcgcgatgagggggcagagctgccggac
atgcgggaaaacgcgctgatggaaagcctcgaaacctggttgctaccgcatctttccggg
gtgaaaaccgccaccgactggaaaaaattcgacgcgcttgaggccctgcgcgcgcggctc
gactggccacagatgcagatgctggaccggctcgcccccgcccatttcgaaacaccgctg
gggcggaaggttccgattgactatgccggcgaccacccggaaatccagatccgcctgcaa
gagctttttggcgtgacccgccaccccagggtgggccgcaccccgctgcgcgtcaccctg
ctgtcacccggacacaaaccggtgcagaccacgcttgatatccccggcttctgggccagt
tcctacgccgatgtgcgtaaggacatgcgtgggcgctacccgaaacatccctggcccgaa
gacccgacccaggccgatccgacgttgcgcgccaaaccgcgcacaaaataa
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