Aliiroseovarius crassostreae: K3J57_11675
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Entry
K3J57_11675 CDS
T08444
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acro
Aliiroseovarius crassostreae
Pathway
acro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3J57_11675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acro03019
]
K3J57_11675
Enzymes [BR:
acro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K3J57_11675
Messenger RNA biogenesis [BR:
acro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K3J57_11675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UWP88547
LinkDB
All DBs
Position
complement(2450096..2451433)
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AA seq
445 aa
AA seq
DB search
MTKFAELGLDPKLVTSVSEAGYDTPTPIQTQAIPLVLSGRDVMGLAQTGTGKTAAFGLPL
IHQLLRNHDKRQPKSIKALVLAPTRELVNQIAVNLRDYVKGTHLKVMTVVGGVSINRQIE
QLNRGTDILVATPGRLIDLMDRRAIRLDTATFLVLDEADQMLDMGFIHALRRIAPELGTP
RQTMLFSATMPKQMEELSRAYLTDPAKVQVTPPGKAADKITQCVYYAQDKEDKARLLIKH
LRGEPDGLSLVFSRTKHGAERLMKKLVAEGFKAVSIHGNKSQGQRDRALAAFRAGEARVL
VATDVAARGIDIPGVSHVFNFDLPEVADNYVHRIGRTARAGADGDAISFVSGVELGLLRD
IEKLMKISIPVLGGERPQEEKRPTRQGRGGGGGGRGRSGGGHRGQGGGTPSGGKSDQRRS
AGGKSRSGAPSGGRPGASRRRKKAS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatttgcagagctcgggctggacccgaagctggtgacctctgtttcagaggct
ggatatgacaccccgactcccattcagactcaggccatcccactggtcctgtcgggccgc
gacgtgatggggctggcgcagaccggcaccggtaagacggccgcctttggcctgccgctg
atccaccagctgttgcgcaaccatgacaaacgccagccgaagtcgatcaaggcgctggtg
ttggccccaacccgcgagttggtgaaccagattgccgtgaacctgcgcgactatgtgaag
ggcacccatctgaaggtgatgaccgtggtgggtggtgtgtcgatcaaccgccagatcgaa
cagctgaaccgcggcacggacattctggtggccacgccgggccgcctgattgacctgatg
gaccgccgggccattcgtttggataccgcaactttccttgtgctggatgaagcggaccag
atgctcgacatggggttcatccatgcgttgcgccggatcgcacccgaacttggcacgccg
cgccagaccatgctgttttccgccaccatgccaaaacagatggaagagctgtcgcgcgct
tatctgaccgatcccgccaaagtgcaggtgacccctccgggcaaggccgccgacaagatc
acccaatgcgtctattatgcgcaggacaaagaagacaaggcgcgcctgctgatcaagcat
ctgcggggcgaacccgacgggttgtcgctggtcttttcgcgcacgaaacatggtgctgaa
cggctgatgaaaaagctggtggccgaagggttcaaagcggtgtcgatccacggcaacaaa
tcgcaaggccagcgcgatcgcgcccttgccgcgttccgtgcaggtgaggcgcgcgtgctt
gtcgcgaccgatgttgcagcacgtgggatcgacattccgggcgtgagtcatgtgttcaac
ttcgatctgccggaagtggctgacaactacgtgcaccgcattggccgcaccgcccgcgca
ggcgctgatggggatgcgatcagctttgtgtccggtgttgagctgggcctgctgcgtgac
attgaaaaactgatgaaaatctcgatcccggtgctgggtggcgaacgcccgcaagaggaa
aaacgcccgacccgtcaaggccgtggcgggggtggcggtggccgtgggcgctctggtgga
ggtcatcgtggtcagggtggcggtacaccttctggcggcaaatccgatcaacgccgctcg
gctggtgggaaatcccgctcgggcgcgccttctggtggtcgacctggggccagtcgccgc
cgtaagaaagcctcataa
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