Alysiella crassa: LVJ80_00450
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Entry
LVJ80_00450 CDS
T08264
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acrs
Alysiella crassa
Pathway
acrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ80_00450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acrs03019
]
LVJ80_00450
03400 DNA repair and recombination proteins [BR:
acrs03400
]
LVJ80_00450
Enzymes [BR:
acrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVJ80_00450
Messenger RNA biogenesis [BR:
acrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVJ80_00450
DNA repair and recombination proteins [BR:
acrs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LVJ80_00450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_22
ResIII
AAA_30
PhoH
AAA_16
AAA_12
DUF2164
Chol_subst-bind
Motif
Other DBs
NCBI-ProteinID:
UOP07002
LinkDB
All DBs
Position
1815202..1819329
Genome browser
AA seq
1375 aa
AA seq
DB search
MASILRQIRGTPCAEHCPYCQTHLNAERHLQKYFAYPSFREYNGKPLQAQAAQAAIAHQS
LLAIFPTGGGKSVTFQVPALMAGEHSKALTVIISPLQSLMKDQVDNLEQRGITEAVTING
LLDPIERQKAVQRVQDGSASLLYISPESLRSRTIEHLILGRNVARFVIDEAHCFSAWGQD
FRVDYLYIAEFIQRIQTHKQHAIPVSCFTATAKPQVVEDIKQYFKKNLDLDLQVFAADVG
RKNLHYQVLPQKNDDERYQTLRHLIQQHNCPTIVYVSRTRKTQELAQQLMQDGFAALPYH
GKMENEQKIANQNAFMTGEAQIMVATSAFGMGVDKKDVGLVVHYEISDSLENYVQEAGRA
GRDEQIQAACFVLFQLEDLDKHFILLNQTKISQKEINQIWKAIKDLCGKRSQITESALNI
AKQAGWQDEHIDEIETRVKTAIAALENAGYVKRGQNMPCVYANSILAKNAQEAIEKIAQS
QIIHPDQKSHAVRVIKKLFSQRSQIHATDEQAESRVDYMADVLGLKTETVVKIVSWLRME
GILADQQDLRAFIRHNGRSQDVITRLSHLADLERALLAQFKEHDGVLHTSYKALNQLFSG
SLKFSNPKIIKSLLAFWKIKNWLGRAETQYDEIALAMKLPLPDVAQWLERKHFLAQFAVR
YLHDLRDLSHQAAAENPDLAYVEFSLGGLQKAFAQQNLSDIATLEEWEDVLFYLVRMDLL
KIEGGFLVVYQRLHVQRLIADNRKQYTKDDYTQLAHYYQMRQEQIHIVGKYAQTMMNDVQ
AALKLVRDYFSLDYRQFLRHYFPAQESESLKRNMTAARFEQWFGNLSPEQRQIIQDNQSQ
HIVVFAAPGSGKTRVLVHKLASLYQLEDVKHEQLLMLTFSRAAAHEFKSRLFDLIGNAAA
YVEIKTFHSYCFDLLGRVGDLQQSDDIIAQAIAKIQSGEVESTRIAKLVLVLDEAQDINA
TQFELVKTLMAHNEDMRVIAVGDDDQTIYDFMGASPHYMQTLLRDFGATKYELLANYRSK
SEIVRFCNHFASHISQRLKENDVAAVQTETGQVEYVAFSGSVLPLLLDKVQAAQGHSVAV
LTHTNEEAIWLAGELKQAQIPCKLVQGNDGFRVHDLLEVRVFEHFLALHGKAVIDEIAWQ
TAKQRAQTHFSRSQHLSLLNNLLGDFEHTHPKTKYVSDWYNFVQESALENFDRAHQASVH
VSTIHKAKGREYDDVLVYLNQAACERDEQKRLLYVAFSRAKSHLCIFANHAHLHKMCANV
GAEIPFYRGEAIAPARELALYLNHGDVNLGRFAACARAVRALQAGDKLLADGEKCCDLSG
NAVLYFSKKFREKLAHYQQSYYQISHAEVNFIVLWHNKENDETSRIVLPIVYLRR
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
ttggcaagcattttgcgccaaattcgcggcacaccttgcgcggaacattgcccctattgc
caaacccatttgaacgcggaacgccatttgcaaaaatatttcgcctaccccagtttccgc
gaatataacggcaaaccgctccaagcgcaggctgcccaagccgccattgcccatcaatct
ttgctggcgattttcccgactggcggtggcaaatccgttacttttcaagtgcctgcttta
atggcgggcgaacacagcaaggctttgaccgtcatcatttcgcccctgcaatcgctgatg
aaagaccaagtggacaatctggaacagcgcggcatcaccgaagcggttacgattaacggc
ttgcttgacccgattgaacgccaaaaagccgtgcagcgcgtgcaagacggttcagccagc
ctgctctatatttcgcccgaaagtttgcggtcgcgcacgattgagcatttgattttgggg
cgcaatgtggcgcgttttgtgattgacgaagcgcattgcttttccgcatgggggcaggat
tttcgtgtggattatttgtacattgccgaattcattcaacgcattcaaacgcataaacaa
cacgccattcccgtatcctgtttcacagccaccgccaaaccgcaagtggttgaagacatt
aaacagtatttcaaaaaaaatctggatttggatttacaggtttttgcggctgatgtggga
cgcaaaaatttgcattaccaagttttgccccaaaaaaacgatgatgaacgctaccaaacc
ttgcgccatttgattcagcaacacaactgcccgaccattgtttacgtttcacggacgcga
aaaacgcaagagttggcgcaacaattgatgcaagacggtttcgccgccctgccttatcac
ggcaaaatggaaaatgaacaaaaaatcgccaatcaaaacgcctttatgacgggcgaagcg
caaatcatggtggcgacttccgcctttggcatgggcgtggataaaaaagatgtgggcttg
gtggtgcattatgaaatttccgattcgctggaaaattatgtgcaagaagcaggtcgtgct
gggcgcgatgaacagattcaggctgcctgttttgtgttgtttcagcttgaagatttggac
aagcattttattttgttgaaccaaaccaaaatttcccaaaaagaaatcaaccaaatttgg
aaagccattaaagatttatgcggcaaacgcagccaaatcaccgaatccgcgctcaatatc
gccaaacaagcaggttggcaagacgaacacattgatgaaattgaaacgcgcgtcaaaacc
gccattgccgcgttggaaaatgcgggctacgtcaaacgcggacaaaatatgccgtgcgtc
tatgccaacagcattttggcaaaaaacgcccaagaagcgattgaaaaaatcgcccaatct
caaatcatacaccccgaccaaaaaagccatgccgtgcgcgtcatcaaaaagctgttttcg
caacgcagccaaatccacgccacagacgaacaagccgaatcgcgtgtggattacatggca
gacgtgttgggtttgaaaacggaaacggtggtcaaaatcgtgtcgtggttgcgcatggaa
gggattttggctgaccagcaggatttacgagctttcattcgccacaatgggcgcagccaa
gatgtcatcacgcgcttgtcgcatttggcggatttggagcgggcgttgttggcgcaattc
aaagaacatgatggggttttgcacacgtcttacaaagccttgaatcaactgttttcaggc
agcctgaaattttccaatccgaaaatcatcaaatctttgctggctttttggaaaatcaaa
aactggctgggtcgcgcggaaacgcaatatgatgaaatcgcactcgccatgaaattgccc
ttgcccgatgtggcgcaatggctggaacgcaaacattttttggcgcaatttgcggtgcgc
tatttgcacgatttgcgcgatttgtctcatcaggctgccgcagaaaatcccgatttggcg
tatgtggaattttctttgggtggtttgcaaaaagcgtttgcccaacaaaatttgagcgac
atcgccactttggaagaatgggaagatgtgttgttttatttggtgcgcatggatttgttg
aaaattgaaggcggctttttggtcgtgtatcaacgcttacatgttcaacgcctgattgcc
gacaaccgcaaacaatacaccaaagacgattacacccagctcgcgcattattaccaaatg
cgccaagagcaaattcacatcgttggcaaatacgcgcaaacgatgatgaatgacgttcag
gctgccttaaaattggtgcgcgattatttcagtttggattatcgccaatttttgcgccac
tattttcccgcccaagaaagcgaatcgctcaaacgcaatatgaccgcagcgcgttttgaa
caatggtttggcaatttgtcgcccgaacaaaggcagattattcaagataatcaaagccag
cacattgtcgtgtttgccgccccagggagtggcaaaacgcgcgtgttggtacacaaattg
gcatctttgtatcaactggaagatgtcaaacacgagcaactgttgatgctgacgttttcg
cgtgctgccgctcatgaatttaaatcgcgcctgtttgatttgattggcaatgcggcagcg
tatgtggaaatcaaaacttttcattcttactgttttgatttactggggcgtgtgggcgat
ttgcagcaatccgatgacatcatcgcccaagccattgccaaaattcagtcgggcgaagtg
gaaagcacgcgcattgccaaactggttttggtgctggacgaagcgcaagacatcaatgcc
acacaatttgaattggtcaaaacattgatggcacacaacgaagacatgcgcgtgattgcc
gttggcgatgacgaccaaacgatttacgattttatgggcgcaagtccgcattatatgcaa
actttgttgcgcgattttggcgcgaccaaatacgaattgttggcaaattaccgcagcaaa
agcgaaattgtgcgattttgcaatcattttgccagccacatcagtcagcgtttaaaagaa
aatgacgttgctgccgtacaaacggaaacggggcaagtagaatatgtggcgttttcaggc
agcgtgttgccgcttttgctggacaaagtgcaagccgcacaagggcacagtgttgccgtt
ttaacgcacaccaatgaagaagccatttggctggctggcgaactgaaacaggcgcaaatc
ccctgcaaattggtgcaaggcaatgacgggtttcgcgtacacgatttattggaagtgcgc
gtgtttgaacattttttggctttgcatgggaaagccgtgatagacgaaatcgcgtggcaa
accgccaaacaacgcgcccaaacgcatttttcgcgcagccaacatttgtctttattaaac
aatttattgggcgattttgaacacacgcacccgaaaaccaaatacgtttccgattggtac
aattttgttcaagaatcggcattggaaaattttgaccgcgcccatcaggcaagcgtacac
gtttccaccatacacaaagccaaagggcgcgaatacgatgatgttttggtgtatttgaat
caggcagcctgtgaaagagatgaacaaaaacgtttgctgtatgtggcattttcgcgcgcc
aaatcgcatttgtgcattttcgccaatcacgcccatttgcacaaaatgtgcgccaatgtg
ggtgcagaaatcccgttttatcgtggcgaagcgattgcgccagcacgtgaattggctttg
tatttgaatcatggtgatgtgaatctggggcgtttcgcggcatgtgcgcgtgctgttcgg
gctttgcaggctggcgataaattattggcggacggggaaaaatgttgtgatttatcgggc
aatgcggttttgtatttttccaaaaaattccgtgaaaaattagcgcattatcaacaatca
tactatcaaatcagccatgcggaagtcaattttattgtgttgtggcacaacaaagaaaat
gatgaaacgagtcggattgtgttgccgattgtgtatttgcggcggtaa
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