Alysiella crassa: LVJ80_01610
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Entry
LVJ80_01610 CDS
T08264
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acrs
Alysiella crassa
Pathway
acrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ80_01610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acrs03019
]
LVJ80_01610
Enzymes [BR:
acrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVJ80_01610
Messenger RNA biogenesis [BR:
acrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVJ80_01610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
UvrD-helicase
Helicase_C_2
AAA_22
Uma2
Motif
Other DBs
NCBI-ProteinID:
UOP07184
LinkDB
All DBs
Position
1580610..1582007
Genome browser
AA seq
465 aa
AA seq
DB search
MSKFNELGLGHEITSALAEQGYETPTPIQTAAIPKALAGHDLLAAAQTGTGKTAAFMLPS
LERLKRYANPSTSPAMHPVRMLVLTPTRELADQIDQNTRNYMKNLPLRHTVLFGGVSMDK
QTADLRAGCEIVVATVGRLLDHVKQRHINLNKVEILVLDEADRMLDMGFIDDIRAIMQML
PKQRQTLLFSATFAPAIRKLAQDFMNTPEIVEVAAQNTTNANVEQHFIAVDAYRKRELLE
RLIVDLQMPQVIVFCKTKQSADQVARDLARRNLSANAIHGDKSQQTRLEVLQQFKAGDLR
VLVATDVAARGLDIAELPFVINYELPVQAEDYVHRIGRTGRAGADGVAISLMDENEVKMY
EAIKSLTRNELPVSRIEHFEPRWDLQVDDVSGSLKAQINREAPPPATPQKSAPKPQNRAE
RKFTKAVPASKPDGLTYPKIEGRSTRRRGRERRTCALLQRNFGLE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaatttaacgaactcggcttgggacacgaaatcacgtccgcgctcgccgaacag
ggctacgaaacgcccacccccattcaaaccgccgctattcccaaagccttggcaggacac
gatttactcgccgccgcgcaaacaggcacaggcaaaaccgccgcgtttatgctgcccagc
ttggaacgcctgaaacgctacgccaaccccagtacatcgcccgccatgcaccccgtgcgc
atgctggttttaacgcccacccgcgaattagccgaccaaattgaccaaaacacgcgcaat
tacatgaaaaatctgccccttcgccacaccgtattattcggcggcgtgagcatggataag
caaaccgcagatttacgcgcaggctgcgaaattgtcgtggcgactgtggggcgattgctt
gaccatgttaaacagcgtcatatcaatttgaataaagtggaaattctcgttttggacgaa
gccgaccgcatgttggacatgggttttattgacgatattcgcgccatcatgcaaatgttg
cccaaacaacgccaaacgctgctgttttcggcaacttttgcgcccgccattcgcaaattg
gcgcaagattttatgaacacccccgaaatcgtagaagtagccgcgcaaaacaccaccaat
gccaatgtggaacaacactttatcgccgtagatgcttatcgcaaaagagaattattggaa
cgcctgattgtggatttacaaatgccgcaagtcatcgtgttttgcaaaaccaaacaatcc
gccgaccaagtggcgcgtgatttggcgcggcgcaatttgtctgccaacgcgattcacggc
gacaaatcgcaacaaacgcgtttggaagtgttgcagcaatttaaagcgggcgatttgcgc
gttttggtggcgaccgatgtggcggcacgtggtttggacattgccgaattgccttttgtg
attaattacgaattgcccgtgcaagcggaagattatgtccatcgcattgggcgcacaggt
cgcgcaggcgcggacggcgtggcgatttcgctgatggacgaaaacgaagtgaaaatgtat
gaagcgattaagtctttgacaagaaacgagttacccgtatcgcgcattgaacattttgaa
ccgcgttgggatttgcaagtggacgatgtttcaggcagcctgaaagcccaaatcaaccgt
gaagctcccccgccagcaaccccccaaaaatctgcccccaaaccgcaaaatcgcgccgag
cgcaaattcaccaaagccgtgccagccagcaaacccgatggtttgacttatccgaaaatt
gaagggcgtagcacgcggcggcgtggtcgtgagcggcgcacctgtgctttattacaacgc
aattttggtttggaataa
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