Alysiella crassa: LVJ80_07395
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Entry
LVJ80_07395 CDS
T08264
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acrs
Alysiella crassa
Pathway
acrs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVJ80_07395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acrs03400
]
LVJ80_07395 (mfd)
Enzymes [BR:
acrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVJ80_07395 (mfd)
DNA repair and recombination proteins [BR:
acrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LVJ80_07395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
AAA_30
Glyco_tran_WecG
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
UOP08116
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All DBs
Position
502941..506501
Genome browser
AA seq
1186 aa
AA seq
DB search
MNFPLPKPAQKSFWTDLSLGSMPYLLSENLPKNSSKIILTADSETAHRLHQAWQFFRPRD
NALFFPDWETLPYEHFSPHQDLVSERLSVLWQLKNGMVDALFLPVATAMQKLAPVSFLLA
RTFWLKVGQTLHIDSLRENLIQAGYHLVDNVLAAGEFAVRGGIVDVFPMGADLPYRLDLF
DEEIDTIKIFNPETQRTIENIQEIRLLPAHEFPTDADAQKIFRSRFREEIDGDPSAAAVY
KAVGNGQFGAGVEHYLPLFFEENCANLFDYVGENAIVVCTDDVHAYANRFWGDVKQRHQF
AQGEPHYPPLAPQFLYLSPDQFSGCLKPYPQIWTSPDHRHDLPNLAVNRQSEQPLLALQD
FQAAFDGKILLCADSLGRRETMSAFFKQNGLDVAQVASWQDFVQQNHKLAICVSPLVQGF
QIADNLVPSPVSNGGGLGWGQFGETTPTPALPRQSGEGADVWQPENALAQSHSQNVKNQV
SGSLKIAVITETELYQYVARPKTRRLKHAKIADTALRDLAEINMGDPVVHQEHGIARYQG
LVNMNFGDGDTEMMLLAYANEAQLYVPVSQLHLISRYSGSASENVQLHKLGTGAWGKAKR
KAAEQARDTAAELLNLYAQRAAQSGFKFEINELDYQAFADGFGYEETEDQAAAIAAVLKD
LTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAKNFADRFAD
FPVKTAALSRFNSSKETKATLAGMADGTVDIVIGTHKLVQDDIAFKNLGLVIIDEEHRFG
VRQKEQLKRLRANVDMLTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFGD
GSVREAVLRELKRGGQVFFLHNEVETIENMREKLAELLPEARIGVAHGQLRERELEQVMR
EFLQQKFNVLLCSTIIETGIDIPNANTIIINRADKFGIAQLHQLRGRVGRSHHQAYAYLF
TGEFVSKDAQKRLDAIAAADELGAGFALAMQDLEIRGAGEILGEGQSGEMAQVGLTLYTE
MLKQAVRELKKGRVPDLDAPLGVNTEIKLHAPALLPESYCPDIHERLVLYKRLATCENIN
QINDIFEELIDRFGLPEQAVKTLVESHKLRIMASDLGISTVDATAEAITLAFGKNMVLNP
AKIIAIMQREKGWRMAGSDKLRVEMKSADVVARIENARKVLKLLAE
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcccccttcccaaacccgcgcaaaaatccttctggacagatttatcattaggc
tcaatgccttatttattaagcgaaaatctccccaaaaattcaagcaaaatcattttaact
gccgacagcgaaaccgcccaccgacttcatcaagcatggcaatttttccgcccacgcgac
aatgccctgtttttccccgattgggaaactttgccctacgaacatttttcgccacaccaa
gaccttgtttctgaacgattatctgtattgtggcaactgaaaaacggtatggtggacgcg
ctgtttttgcccgttgccaccgccatgcaaaagctcgcgcctgtgtcgtttttgttggca
cggacgttttggttgaaagtcggtcaaactttacacattgattctttaagggaaaatttg
attcaggcaggctatcatttggtggacaatgtgttggcggcaggcgaatttgccgtgcgc
ggtggcattgtggacgtgttccccatgggtgcggatttgccctatcgccttgatttgttt
gatgaagaaattgacaccatcaaaattttcaaccccgaaacgcagcgaaccattgaaaac
attcaagaaatcagattgttgcccgcccacgaattccctaccgatgcggacgcgcagaaa
atcttccgcagccgtttccgtgaagaaattgatggcgaccccagcgcggcagcagtgtac
aaagcggtgggcaatgggcaatttggcgcaggcgtggagcattatttgcctttgtttttt
gaagagaattgtgccaatctgtttgattatgttggcgaaaatgcgattgtggtttgcacg
gacgatgtccacgcctacgccaaccgtttttggggcgatgtgaagcaacgccaccaattc
gcgcagggcgagccgcattatccgccacttgcaccgcagtttttgtatttgtcgcccgac
cagttttcaggctgcctgaaaccgtatccgcaaatttggacttcgcccgaccaccgtcac
gatttgcccaatcttgccgtaaatcgtcagtcggaacagccgcttttggcgttgcaggat
tttcaggcagcgtttgacggcaaaattttgctttgtgccgacagcttggggcgcagggaa
accatgtccgcttttttcaaacaaaatggtttggacgtggcacaagtggcaagttggcag
gattttgttcaacaaaaccataaattggcaatttgcgtgtcgcctttggtgcagggcttt
caaattgccgacaaccttgttccctcccccgtctcaaacgggggagggttagggtggggg
caatttggcgaaaccacccccaccccagccctcccccgccagtcgggggagggggcagat
gtgtggcagcctgaaaatgcgttggcacaatcccattcacaaaatgtgaaaaatcaagtt
tcaggcagcctgaaaattgccgtcatcaccgaaaccgaactttatcaatacgttgctcgc
cccaaaacgcgccgcttgaaacacgccaaaattgccgacaccgccttgcgcgatttggca
gaaatcaacatgggcgaccccgttgtccaccaagaacacggcattgcgcggtatcaaggc
ttggtcaacatgaattttggcgatggcgacaccgaaatgatgttgctggcatacgccaac
gaagcgcaactgtatgtgcctgtttcacaactgcatttaatcagccgctattcaggcagc
gcgtccgaaaacgtgcaattacacaaactcggcacaggcgcgtggggcaaagccaaacgc
aaagccgccgaacaagcccgcgacaccgcagccgaattgctcaatttgtatgcccaacgc
gcagcacaatcgggtttcaaatttgaaatcaacgaattggattatcaagcctttgcagac
ggattcggctacgaagaaaccgaagaccaagccgccgccatcgctgccgtgttgaaagat
ttaacccaagccaaaccgatggacaggctggtgtgtggcgatgtcggttttggcaaaacc
gaagtggcgttgcgtgccgcatttgtggcggtgatgggtggcaaacaggtggcggtactc
gcgcccaccactttgctggtggagcaacacgcgaaaaattttgccgaccgttttgccgat
tttcccgttaaaacggcggcgttgtcgcgttttaacagcagcaaagaaaccaaagccaca
ctcgcaggcatggcagacggcacggtggacatcgtgattggcacacacaaattggtgcaa
gatgatattgcgtttaaaaacttgggcttggtcatcattgacgaagaacaccgctttggc
gtgcgccaaaaagagcaactcaaacgccttcgcgccaatgtggacatgctcacgctgacc
gccacgcccattccgcgtacattaagcatggctttggagggtttgcgcgatttttcattg
attaccaccgcgccatcgcgccgccttgccgtgaaaacttttgtcaaaccctttggcgat
ggcagcgtgcgcgaagccgtgttgcgcgaattgaaacgcggcggacaggtgtttttcctg
cacaatgaagtagaaaccattgaaaatatgcgagaaaaattggcagaactcttgcccgaa
gcccgcattggcgtggcacacggacagttgcgcgaacgcgaattggaacaggtcatgcgc
gaatttttgcaacagaaattcaatgttttactctgttctaccatcattgaaacggggata
gacattcccaatgccaacacgattatcatcaatcgtgccgacaaattcggtatcgcccag
ttgcaccagttgcgtgggcgcgtggggcgcagtcatcatcaggcgtatgcttatcttttt
actggcgaatttgtcagcaaagacgcgcaaaaacgtttggacgcgattgcggctgccgat
gaattgggtgcaggtttcgcgcttgccatgcaagatttggaaattcgcggcgcaggcgaa
attttgggcgaggggcaatcgggcgaaatggcgcaagtgggtttgactttgtacacggaa
atgttgaaacaagccgtgcgcgagttgaaaaaagggcgtgtgcctgatttggacgcgcct
ttgggtgtgaacacggaaatcaagctccatgcacctgctttgctgcctgaaagttattgc
cccgatattcacgaacgtttggtgctgtacaaacgtttggcaacttgcgaaaacatcaat
caaatcaacgatatttttgaagaactcatagaccgtttcgggctgcctgaacaagccgtg
aaaacgctggtggaaagccacaaattgcggattatggcaagcgatttgggcatcagcacg
gtggacgcgactgccgaagccatcacattggcgtttggcaaaaacatggtgctgaaccca
gccaaaatcatcgccatcatgcaacgcgaaaaaggctggcgcatggctggcagcgacaaa
ttgcgcgtggaaatgaaaagcgcagatgtggtggcacggattgaaaatgcgcggaaagtg
ttaaaattgttggcggaatga
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