Aerophototrophica crusticola: HHL28_11585
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Entry
HHL28_11585 CDS
T10567
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acru Aerophototrophica crusticola
Pathway
acru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HHL28_11585 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acru03021
]
HHL28_11585 (rpoC)
03400 DNA repair and recombination proteins [BR:
acru03400
]
HHL28_11585 (rpoC)
Enzymes [BR:
acru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HHL28_11585 (rpoC)
Transcription machinery [BR:
acru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HHL28_11585 (rpoC)
DNA repair and recombination proteins [BR:
acru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HHL28_11585 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QJE73648
UniProt:
A0A858R8C6
LinkDB
All DBs
Position
complement(2364668..2368963)
Genome browser
AA seq
1431 aa
AA seq
DB search
MNELMNIFGQPQGPQSFDQIRISIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLKDLERILYFENYVVVEPGLTDLKQHQLLSEDDLLDKQDKFGEDAFTAK
IGAEALKDLLTSIDLVEEMDVCRDELRETASEAKRKKLVKRLKLIEAFLGIPQEVEDEGA
FHRFEGYKRKIERPDQRPLFKVYPEATRPEWMILDVVPVIPPELRPLVPLDGGRFATSDL
NDLYRRVINRNNRLKRLIELKAPDIIVRNEKRMLQEAVDALFDNGRRGRVITGANKRPLK
SISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYAKL
ELYGLASTIKAAKRMVEKERPEVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPTLIEGK
AIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPASGRPIIVPSQD
IVLGLYYITMELPAMKGEGMAFHSIGEIEHALQEKVVSLHARVQARYRTVDDEGKPITVR
VTTTPGRMLLSEILPRHPAIKFDMINRLLTKKEIGNIIDIVYRHCGQKETVIFADRMMKL
GFTNAFKAGISFGKDDMVIPAEKEGLIREAQERVKEFEQQYLDGLITQGEKYNKVVDVWS
ETTEKVATAMMKVIEQPKPGVGVNSVYMMAHSGARGSPAQIKQLAGMRGLMAKPSGEIIE
TPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIITEIDCGT
KNGLTVKAVVDGGDVVVPLGERLLGRTATFDVIHPLTGEVIVPASDLITEREVELIERAG
IDQVHIRSVLTCETQDGVCAHCYGRDLARGTRVNIGEAVGVIAAQSIGEPGTQLTMRTFH
IGGAAQRGAEQSFIEATLDAKVIVRNRNLVLNSEGVPVVMGRNCELALLDEQGRERAKHR
VPYGAKLNKALAMDGAPIKKGDRMAEWDPYTLPILTEKEGTATYVDLVEGVSVREVMDEA
TGISSKVVIDWRQQPRGADLRPRVTLTDEKGEVVKLPNGLEARYYMSVDAILSVDNGAKV
RAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKDFAIISDIDGRVEFGKDYKTKRRI
VVKNDETQEEKEYLIPKGKHISVQEGDYVQKGDLLMDGNPVPHDILAVMGVEALANYLIN
EIQDVYRLQGVKINDKHIEVIVRQMLQKVEITEPGDTTFLTGEQVDRVEFEEENRQVQRR
LDEGELDLRFAQGKPVLQGITKASLQTRSFISAASFQETTRVLTEAAVQGKVDNLEGLKE
NVIVGRLIPAGTGSVVNRLKQIAAERDKALQMAEEGGDTPALPDAQQTAAE
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagttgatgaacatcttcggccagccgcaggggccgcagagtttcgaccagatc
cgcatctcgatcgccagcccggagcgcatccgctcctggtccttcggcgagatcaagaag
ccggagacgatcaactaccggaccttcaagccggagcgcgacggcctgttctgcgcccgc
atcttcggtccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatgaagtac
cgcggcatcatctgcgagaagtgcggcgtcgaggtgaccctgtccaaggtccgccgcgag
cgcatgggccatatcgagctggcctcgccggtggcgcacatctggttcctgaagtccctg
ccgagccgcatcggcctgctgctcgacatgacgctgaaggacctggagcggatcctctat
ttcgagaactacgtcgtcgtcgagccgggcctgacggacctgaagcagcaccagctgctg
tctgaggacgacctgctggacaagcaggacaagttcggcgaggacgccttcaccgccaag
atcggcgccgaggccctgaaggacctgctcacctccatcgacttggtcgaggagatggac
gtctgccgcgacgagctgagggagaccgccagcgaggccaagcgcaagaagctggtgaag
cggctgaagctgatcgaggccttcctgggcatcccccaggaggtggaggacgagggtgcc
ttccaccgcttcgagggctacaagcgcaagatcgagcggccggaccagcgcccgctgttc
aaggtctacccggaggccacccggcctgagtggatgatcctggacgtggtgccggtgatc
ccgcccgagctgcgcccgctggtcccgctggacggcggccgcttcgccacgtccgacctg
aacgacctgtaccggcgcgtcatcaaccgcaacaaccgcctgaagcggctgatcgagctg
aaggcgccggacatcatcgtgcgcaacgagaagcgcatgctacaggaagccgtcgacgcg
ctgttcgacaacggccgccgcggccgcgtcatcaccggcgccaacaagcgtccgctgaag
tccatcagcgacatgttgaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtggtgggcccggagctgaagctccaccag
tgcggcctgcccaagaagatggcgctggagctgttcaagcccttcatctacgccaagctg
gagctgtacggcctcgcctccaccatcaaggcggccaagcgcatggtggagaaggagcgg
ccggaggtctgggacatcctggaggaggtcatccgcgagcacccggtcatgctgaaccgg
gcgcccacgctgcaccgcctcggcatccaggcgttcgagccgaccctgatcgagggcaag
gccatccagctgcacccgctggtctgcaccgccttcaacgccgacttcgacggtgaccag
atggccgtgcacgtcccgctgagcctcgaggcccagctggaggcgcgcgtgctgatgatg
tccaccaacaacatcctgtcgcccgccagcggccgccccatcatcgtgccgtcccaggac
atcgtcctgggcttgtactacatcacgatggagctgccggcgatgaagggcgagggcatg
gccttccactccatcggcgagatcgagcacgccttgcaggagaaggtggtcagcctgcac
gcccgggtccaggcgcgctacaggaccgtggacgacgagggcaagcccatcaccgtccgc
gtgaccacgaccccgggccgcatgctgctgtccgagatcctgccgcgccacccggccatc
aagttcgacatgatcaaccggctcctgaccaagaaggagatcggcaacatcatcgacatc
gtctaccgccactgcggtcagaaggagacggtgatctttgccgaccggatgatgaagctg
ggcttcaccaacgccttcaaggcgggcatctccttcggcaaggacgacatggtcatcccc
gccgagaaggaaggcctgatccgcgaggcgcaggagcgggtgaaggagttcgagcagcag
tacctggacggcctgatcacccagggcgagaagtacaacaaggtggtcgacgtctggtcg
gagacgaccgagaaggtcgccaccgcgatgatgaaggtcatcgagcagccgaagccgggc
gtgggcgtcaactccgtctacatgatggcccactccggtgcccgtggctcgccggcccag
atcaagcagctcgccggcatgcgcggcctgatggccaagccgtcgggtgagatcatcgag
acgccgatcatctccaacttcaaggaaggcctgacggtgctggagtacttcaactccacg
cacggcgcccgcaagggcctggccgacaccgccttgaagacggcgaactccggttacctg
acccgccgcctggtggacgtggcgcaggacgcgatcatcaccgagatcgactgcggcacc
aagaacgggctgacggtgaaggccgtggtggacggcggcgacgtggtcgtgcccctgggc
gagcgcctgctgggccgcaccgccaccttcgacgtgatccacccgctgacgggcgaggtc
atcgtccccgccagcgacctgatcaccgagcgggaggtggagttgatcgagcgggcgggc
atcgaccaggtgcacatccgctccgtcctgacctgcgagacccaggacggcgtctgcgcc
cactgctatggccgtgacctggcccgcggcacgcgggtcaacatcggcgaggcggtcggc
gtcatcgccgcccagtccatcggtgagccgggcacgcagctgacgatgcgtaccttccac
atcggtggtgccgcccagcgtggcgcggagcagtccttcatcgaggcgaccctggacgcc
aaggtgatcgtccgcaaccgcaacctggtgctcaactccgagggcgtgcccgtggtgatg
ggccgcaattgcgagctggcgctgctggacgagcagggccgcgagcgggccaagcaccgg
gtgccctacggcgcgaagctgaacaaggccctggccatggacggcgcgcccatcaagaag
ggcgaccggatggcggagtgggacccgtacaccctgccgatcctgacggagaaggaaggt
acggccacctacgtcgacctggtggagggcgtgtccgtccgcgaggtcatggacgaggcc
accggcatctccagcaaggtcgtcatcgactggcggcagcagccccgcggcgccgacctg
cgtccccgcgtcaccctgaccgacgagaagggtgaggtggtgaagctgccgaacgggctg
gaggcgcgctactacatgagcgtggacgccatcctgtccgtggacaacggtgccaaggtg
cgggccggcgacgtgctggcacgtatcccgcgcgagtcctccaagacccgcgacatcacc
ggcggtctgccccgcgtggccgagctgttcgaggcgcgtcgtccgaaggacttcgccatc
atctcggacatcgatggccgggtggagttcggcaaggactacaagaccaagcgccgtatc
gtcgtgaagaacgacgagacgcaggaggagaaggagtacctgatccccaagggcaagcac
atctccgtgcaggagggtgactatgtccagaagggtgacctgctgatggacggcaacccg
gtgccgcacgacatcctggcggtgatgggggtggaggcgctggccaactacctcatcaac
gagatccaggacgtctaccggctgcagggcgtgaagatcaacgacaagcacatcgaggtg
atcgtccgccagatgctgcagaaggtcgagatcaccgagcccggcgacaccaccttcctc
accggggaacaggtggatcgcgtggagttcgaggaggagaaccggcaggtgcagcgtcgc
ctggacgagggggagctggacctccgcttcgcccagggcaagccggtgctgcagggcatc
accaaggcctcgctgcagacccggtccttcatctcggccgcgtcgttccaggagaccacc
cgcgtcctcaccgaagccgcggtgcagggcaaggtggacaacctggagggcttgaaggag
aacgtcatcgtcggccgcctcatcccggccggcacgggctccgtggtcaaccgcctgaag
cagattgcggcggagcgggacaaggccctgcagatggccgaggagggtggcgacaccccg
gccctgccggacgcccagcagacggcggccgagtaa
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