Crystallibacter crystallopoietes: AC20117_16755
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Entry
AC20117_16755 CDS
T05322
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acry
Crystallibacter crystallopoietes
Pathway
acry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC20117_16755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acry03019
]
AC20117_16755
Messenger RNA biogenesis [BR:
acry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AC20117_16755
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
BRK
DUF459
Motif
Other DBs
NCBI-ProteinID:
AUI52188
UniProt:
A0A1H1H2J6
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Position
3604659..3606350
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AA seq
563 aa
AA seq
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MSESTITELRTPPKLADGTLRVVPLGGLGEIGRNMAVFEINSKLLIVDCGVLFPEEHQPG
VDLILPDFSYIEDRLDDIVGVVLTHGHEDHIGAVPYLLRMRQDIPLIGSQLTLALVEAKL
TEHRIKPYALTVSEGQIEQFGPFECEFVAVNHSIPDALAVFIRTAAGNVLHTGDFKMDQL
PLDGRLTDLRAFARLGEEGVDLFMSDSTNADIPGFTTAEKEIGPVLERLFGQVQKRIIVA
SFSSHIHRVQQVLDAAAAHGRHVAFVGRSMVRNMAIAEKLGYLNVPPGIIVDLKNVEDFP
DDRIVLMSTGSQGEPMAALSRMANGDHRIQVGKGDTVILASSLIPGNENAVFRIINGLLK
LGAEVIHKGTAKVHVSGHAAAGELLYCYNILKPKNAMPVHGETRHLIANGNLARQTGVAD
ENVLLADDGSVVDLVDGKARIVGQVECGFVYVDGSSIGEITDSDLKDRRILGEEGFISVI
TVVNRSTGKIVSGPEIHARGFAEDDAVFDNIKPQITAALEEAVVGTKEHTTYQLQQVVRR
VVGTWVNKRHRRRPMIVPVVLEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtccacaattacagagctgcgaaccccgccgaaactcgccgacggtaccctg
cgcgtagtgccgctgggcggcctgggcgagatcggccggaacatggcggtgttcgagatc
aactcgaagctgctgattgtggattgcggtgtcctcttccccgaagaacaccagcccgga
gtggatctgatcctgccggacttctcatatattgaggaccggcttgacgacatcgtcggc
gtggtcctgacccatgggcatgaggatcatatcggcgcagttccctacttgctgcgcatg
cgccaggacattccgctgatcggttcacagctgaccctggcgctggtcgaggcgaaactg
accgagcaccgcatcaagccgtacgcgctgaccgtttccgaaggccagatcgagcagttc
ggaccgttcgagtgcgaattcgttgccgtcaaccactccattccggacgcgttggctgtc
ttcatccgaacggccgcgggcaatgtcctgcacaccggcgacttcaagatggaccagttg
ccgctggacggacgcctgactgacctgcgtgccttcgcccggctcggcgaagaaggcgtg
gacctgttcatgtcggattcgaccaacgccgacatccccggcttcaccaccgcggaaaag
gaaatcggaccggtgctggaacggctcttcgggcaggtccagaagcggatcattgtcgcg
tcgttttcttcgcacatccaccgcgtccagcaggtgctcgacgccgccgccgcgcatggg
cgccatgtcgctttcgtgggccggtccatggttcgcaacatggccatcgccgagaagctg
ggctacctgaacgtacccccgggcatcattgtcgacctgaaaaacgtcgaagacttcccg
gatgaccggatcgtgctcatgtccaccggctcccagggggaaccgatggctgccctctcg
cggatggctaacggagaccaccggatccaggtgggcaagggcgacaccgtgatcctcgcg
tcgtcgttgattccgggcaacgagaacgctgtcttccggattatcaacggcctgctcaag
ctgggtgccgaggtgatccacaagggcacggccaaggttcatgtctccggccatgccgct
gccggtgagctgctgtattgctacaacatcctcaagcccaagaacgcgatgccggtccac
ggcgaaacgcgccatctgatcgccaacggcaacctggcgcggcagaccggcgtggccgac
gagaatgtcctgctggccgatgacggcagtgtggtcgatcttgtcgacggcaaagcgcgc
atcgtgggccaggtcgaatgcggcttcgtctatgtggacggctccagcatcggcgaaata
accgactcggatctgaaggaccgccggatcctgggcgaagaaggcttcatctcggtcatc
accgtggtcaaccgcagtaccggcaagatcgtctccggcccggaaatccatgcgcgcggt
ttcgccgaggacgacgcggtctttgacaacatcaagccccagatcacggccgccctggag
gaagccgtggtgggcaccaaggagcacaccacctaccagctccagcaggtggtccgcagg
gtcgtgggtacctgggtcaacaagcggcaccgccggcggcccatgatcgtaccggtcgtg
ctcgaagcctga
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