Anolis carolinensis (green anole): 100551826
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Entry
100551826 CDS
T01608
Symbol
lsm1
Name
(RefSeq) LSM1 homolog, mRNA degradation associated
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100551826 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acs03019
]
100551826 (lsm1)
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100551826 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
100551826 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Nicastrin
Motif
Other DBs
NCBI-GeneID:
100551826
NCBI-ProteinID:
XP_003226772
UniProt:
A0A803TME6
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Position
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AA seq
184 aa
AA seq
DB search
MPYSSSSPLSDGGLAAAAAASSSCPAEASASGPGAGQPPSRADAGAGSGAKMNYMPGTAS
LIQDIDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGE
NVVLLGEIDLEKESDTPLQQVSIEEILEIQRVEQQTKQESEKLKAQALKERGLSIPRADT
LDEY
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtcctcctccccgctaagcgacggcggcctcgcggctgctgctgctgct
tcttcttcctgccccgccgaggcgtctgcttccgggccgggagccgggcagcctccgtcg
cgggccgatgcgggcgcgggctccggggcgaagatgaactacatgccggggacggcgagc
ctcatccaggacatcgataagaaacatttggttctccttcgagatggcaggacgctgatt
gggtatttgcgcagcattgaccagtttgccaatttggtgttgcaccaaacggtggagcgc
attcatgtggggaaaaagtacggggacatcccacggggcatctttgtggtgagaggcgag
aacgtcgtgctccttggggagatcgacctggaaaaggaaagcgacacccctttgcaacaa
gtctcaatagaagagattctggaaatccagcgggtggagcagcaaaccaagcaggaatcg
gagaagctcaaagcacaagcgctgaaggagcggggtctctccatcccacgggccgacacc
ctggatgaatactag
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