Anolis carolinensis (green anole): 100553235
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Entry
100553235 CDS
T01608
Symbol
ddx39b
Name
(RefSeq) DExD-box helicase 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03013
Nucleocytoplasmic transport
acs03015
mRNA surveillance pathway
acs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100553235 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
100553235 (ddx39b)
03015 mRNA surveillance pathway
100553235 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acs03019
]
100553235 (ddx39b)
03041 Spliceosome [BR:
acs03041
]
100553235 (ddx39b)
Enzymes [BR:
acs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100553235 (ddx39b)
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100553235 (ddx39b)
Spliceosome [BR:
acs03041
]
Complex C
Other components
EJC/TREX
100553235 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100553235 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100553235
NCBI-ProteinID:
XP_003218034
Ensembl:
ENSACAG00000012240
LinkDB
All DBs
Position
2:complement(194065621..194077137)
Genome browser
AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgatgttgacaatgagctgttggattatgaagatgatgaggtggaaaac
caggcagctggagaaggagtggatgtcccatctaagaaagacgtcaaggggtcctatgtc
tccatccacagttctggttttcgcgattttttgttaaaaccggaacttctccgtgccatt
gtcgattgtggttttgagcacccctccgaagtgcaacatgaatgcatcccccaggcaatt
ttaggcatggatgttctttgccaggccaaatccggtatgggcaagactgcggtctttgtt
cttgccacacttcagcagttggagccagtcacaggacaggtgtctgtgctcgtgatgtgt
cacactcgtgagctggccttccagatcagtaaggagtatgaacgcttttccaagtatatg
cccagtgtcaaggtggcggtgttctttgggggcctgtccatcaagaaggatgaggaggtg
ctgaagaagaactgcccgcacattgtggtgggaaccccgggccgcatcctcgctttggcc
cgcaacaagagcctcaacctgaaacatatcaagcacttcatcctggacgaatgtgacaag
atgcttgagcagcttgatatgcgccgggatgtccaggagatcttccgcatgacccctcat
gaaaagcaggtcatgatgttcagtgccactctcagcaaggaaatccgccctgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggacgatgagaccaagctgacgctgcac
ggtctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctgtttgac
ctgcttgatgtactggagttcaatcaggtggtcattttcgtgaagtctgtgcagcgctgc
attgcactcgctcagctgctggtggagcagaacttccccgccattgccatacacaggggc
atgccccaggaagagagattgtcacggtaccagcagttcaaggatttccagcgccgtatc
ttggtggcaaccaatctctttggtcgtggcatggacattgagcgggtcaatatcgctttc
aattacgatatgccagaagattcagacacctacctgcaccgggtggcacgtgctgggcgc
ttcggcaccaagggcttggcgatcactttcgtgtcggatgaaaatgatgccaagatcctc
aacgaagtgcaggaccgctttgaggtgaacatcagtgagcttcctgacgagatcgacatc
tcttcctacattgaacagacccgataa
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integrated database retrieval system
