Anolis carolinensis (green anole): 100556539
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Entry
100556539 CDS
T01608
Symbol
pabpc4
Name
(RefSeq) poly(A) binding protein cytoplasmic 4
KO
K13126
polyadenylate-binding protein
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03015
mRNA surveillance pathway
acs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100556539 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
100556539 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acs03019
]
100556539 (pabpc4)
03041 Spliceosome [BR:
acs03041
]
100556539 (pabpc4)
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100556539 (pabpc4)
mRNA cycle factors
Stress granule specific factors
100556539 (pabpc4)
Spliceosome [BR:
acs03041
]
Complex C
Other components
Complex C specific factors
100556539 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
POP1_C
DUF6262
Motif
Other DBs
NCBI-GeneID:
100556539
NCBI-ProteinID:
XP_008118791
Ensembl:
ENSACAG00000002544
LinkDB
All DBs
Position
Unknown
AA seq
629 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLFYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANAILNQFQPAAGGYFMPAVPQAQSRP
PYYAPNQMTQIRPNPRWQQGGRPQGFQGMPNMRQSGPRPNLRHLAPAGNAQASRGLPGAP
QRVGIPPTGPNLAPRPPAAAQVPRAVPPYKYASSVRSPHPAVQPLQAPQPAVHVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRS
KVEEAVAVLQAHQAKKEAAQKVGIVAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctacccgatggcctcgctctacgtgggggacctgcacccc
gacgtcaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccgctctttgttctatgcttatgtcaacttccag
cagcctgcggatgctgagcgagccttggacaccatgaactttgacgtgatcaagggcaag
cccatccgcatcatgtggtcccagcgagacccttctctgaggaagtctggtgtagggaac
gtcttcattaagaacctggacaaatctatcgacaacaaggcactttatgacactttctct
gcttttgggaatatcctttcttgcaaggtggtgtgcgatgagaatggctctaagggctac
gcctttgtccactttgagacacaggatgccgccgaccgggccattgagaagatgaatggc
atgctgctgaatgaccgcaaagtgtttgttggaagatttaagtctcgcaaagagcgggag
gcagagctgggagccaaagcgaaggagttcaccaacgtctacatcaaaaactttggggac
gacatggatgacgagaggctgaaggaactgtttggcaaatacggcaagaccctcagtgtc
aaagtcatgacagaccctactggaaagtccaaaggctttggctttgtgagttttgaaaaa
cacgaagaagccaacaaggccgtagaagaaatgaatggaaaagacatcaatgggaagatg
gtgtttgtgggccgagcacagaagaaagtggagcgccaggctgagctgaagcgcaggttt
gagcagctcaagcaggagaggatcagccgatatcagggagttaatttgtacattaagaac
ctggatgatacaattgatgacgagaagctgaggaaggaattctctccttttggttctatt
acaagtgccaaggtcatgctggaagaggggcgcagcaaaggctttggcttcgtctgcttc
tcctccccagaggaggccaccaaggccgtgacagagatgaacggacgcattgtgggctcc
aagccattgtacgtagccttggcccagaggaaggaggagcgcaaggcccacctcaccaac
cagtacatgcagcgcattgcaggaatgagagccctcccggccaatgccatcctcaaccag
ttccagccggcggcaggaggttatttcatgcctgctgtgccccaggcccagagcagaccc
ccttactatgcccccaaccagatgacgcagatccggcccaatcctcgctggcagcaagga
ggacggcctcaaggctttcaagggatgcccaacatgcgccagtctggaccaaggcccaat
ttgcgccacttggctccggccggaaatgcccaggcctcgcggggtttgcctggtgccccc
caaagggttggcatccctcccacgggtccgaacttagcccctcggccccctgcagctgcc
caggtacccagggctgtccctccctacaaatacgcctccagcgtccgaagcccccaccca
gcagtccagcccttgcaggccccgcagcctgcagtccatgtccaaggacaggaacccttg
acggcctccatgttggctgctgctcctccccaggaacagaagcagatgctgggtgagcgc
ctgttccccctcatccaagccatgcacctcagtctggcggggaagatcaccgggatgctg
ctagagattgacaactctgagctgctgcacatgctggagtctccagagtccctccgctca
aaagtggaggaggccgtggcggtgttgcaggcccaccaggcaaagaaagaagccgcccag
aaagtgggcatcgttgctgctacctcttga
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