Anolis carolinensis (green anole): 100556882
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Entry
100556882 CDS
T01608
Symbol
skiv2l2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100556882 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acs03019
]
100556882 (skiv2l2)
03041 Spliceosome [BR:
acs03041
]
100556882 (skiv2l2)
03009 Ribosome biogenesis [BR:
acs03009
]
100556882 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
acs03016
]
100556882 (skiv2l2)
Enzymes [BR:
acs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100556882 (skiv2l2)
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100556882 (skiv2l2)
Spliceosome [BR:
acs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100556882 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
100556882 (skiv2l2)
Ribosome biogenesis [BR:
acs03009
]
Eukaryotic type
Pre-60S particles
Helicases
100556882 (skiv2l2)
Transfer RNA biogenesis [BR:
acs03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100556882 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
100556882
NCBI-ProteinID:
XP_003216230
Ensembl:
ENSACAG00000015200
LinkDB
All DBs
Position
2:complement(2528409..2573014)
Genome browser
AA seq
1039 aa
AA seq
DB search
MADAFGDDLFSVFEEDASASAATSKKTKGAPEPAAGPVSTAGKRPEGKSAAPAKFPAKIK
REEEADNGDIAVLGKKPKLDDFTAEDINLTDLMPKVKVQAVETVEGCTHEVALPADEDFI
ALKPRTGKAAKEYPFILDAFQREAILCVDNNHSVLVSAHTSAGKTVCAEYAIALALREKQ
RVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVM
REVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQP
CHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKG
RKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEV
FNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATE
TFAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDDRGIVILMVDEKM
SPSVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVE
KVTKLEQQYNEIEIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVK
NEDDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLNCSKESLKNSATEAAKPAKPEEK
GEMQVVPVLLHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDM
GIKDPGLKKVIQKVEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKAAKRELKKAR
TVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAE
QATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIEEDTYLSSFK
PNLMDVVHTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKF
AEGITKIKRDIVFAASLYL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgatctgttcagcgtgttcgaggaagatgcctccgcctcg
gccgccacctcgaagaagacgaagggagcccccgagccagccgctggccccgtgagcaca
gctgggaagcgaccagagggcaaatccgcagcgcctgctaaatttccagcaaaaataaaa
cgagaggaagaggctgataatggagacattgcagtcttggggaagaaaccaaagttggat
gattttactgcggaagatatcaatttgaccgacctgatgccgaaagtaaaggtgcaggca
gtagaaactgttgaaggctgtactcatgaggttgctcttcctgcggatgaagatttcata
gcccttaagccaagaacggggaaagctgcaaaggaatatccattcattcttgatgctttt
caaagagaagctattctgtgtgtggataacaatcattcggttttagtgtctgctcataca
tcagcaggaaaaacagtatgtgcagagtatgctattgcattggctttgagggagaaacag
cgtgtgatctttaccagtccaattaaagctctaagtaaccaaaaatatcgtgagatgtat
gaagaatttcaagacgttggtttgatgactggagatgtcaccatcaaccctacagcatct
tgccttgtaatgacaacagaaattttgagaagtatgctttacagaggttctgaggtcatg
cgtgaagttgcctgggtcatctttgatgaaattcattacatgagagattcagaacgtggt
gtggtatgggaagaaaccattattttgctgccagataatgttcattatgtgtttctttct
gccaccattccaaatgcacgccaatttgccgaatggatatgccatcttcacaaacagcct
tgccatgtgatctacacagattaccggcctactcctctgcagcactatatcttcccagca
gggggcgatggacttcaccttgtggttgacgaaaatggtgattttagggaagataatttt
aatacagcaatgcaagtacttcgagacgctggtgacttagccaaaggggatcaaaaaggc
aggaaaggaggaacaaaaggtccatccaatgtatttaagattgtaaagatgattatggaa
agaaacttccaacctgtcataatattcagtttcagtaaaaaagattgtgaagcatatgca
cttcaaatgacaaaattggatttcaatacagatgaagaaaaaaagatggttgaagaagtg
tttaataatgcaattgactgtttatctgatgaggacaaaaaactgccacaagttgagcat
gtgctgcctcttctgaagcgtggcattggaattcaccatggaggtttacttcctattctg
aaggaaacaatagaaatacttttctctgaaggactgataaaggcattatttgcaacagaa
acgtttgcaatgggaataaacatgccagcaaggacagtactattcacaagtgctcggaag
ttcgatgggaaggacttccgatggatcacctcaggggaatatattcagatgtctggtcgt
gctggccgccgtggcatggatgatagaggaatagtaattcttatggtggatgaaaagatg
agcccatccgttggaaaacagcttctgaagggatctgcagaccctctgaacagtgctttc
catttgacgtacaacatggtattaaatttgctgcgtgtggaagaaattaacccagaatac
atgctagaaaaatctttttaccagttccaacattacagagcaattccaggagttgttgaa
aaggtgactaagttggaacagcagtacaacgaaattgaaattccaaatgaggaaaatgtt
gtcatctactataaaatcagacaacagcttgctaaactgggtaaagaaatagaagaatac
attcataagccaaaatactgcttaccgtttttacagccaggaagactagtaaaggtaaaa
aatgaagatgatgattttggctggggagtggtggtaaatttctccaagaagtcaaatgtg
aagcctaactctggtgaactggacccactttatgtcgttgaagtcctcctgaactgcagc
aaagagagcctgaaaaattctgcgacagaggccgcaaaaccagcaaaacctgaggagaaa
ggggagatgcaggttgttcctgttctgctgcatcttctgtcagcaatcagcagtgttcgg
ctttatataccaaaagacctgaggcctcttgataataggcagagtgtactgaagtccata
caggaagtacaaaagcgatttcctgatggagttcctttgctggatcctattgacgacatg
ggcattaaagatccaggtctgaaaaaagtaatccaaaaagtagaagcctttgagcacaga
atgtattctcatccacttcacaatgattctaacttagaaactgtgtataaactttgtgaa
cgaaaagcacagattgctgtagacataaaagcagcgaaacgggaactgaagaaagctagg
actgttttacaaatggatgagctcaagtgtcgtaaacgggttttgagaaggttgggtttt
gcaacctcttctgacgtcatagagatgaaaggacgggttgcttgtgaaattagcagtgca
gatgaactgctgttgacggaaatgatgtttaatgggctattcaacgatttatctgcagaa
caagcaacggctttactgagctgctttgtatttcaagaaaattccagtgaaatgcccaaa
ctcacagaacagttggcaggccccctccgccagatgcaggaatgtgcaaaaagaattgcc
aaagtatcagcagaagctaaattggaaattgaggaggatacctatctcagttcttttaaa
ccaaacctgatggatgtggtgcacacatgggccaatggcgctacatttgctcacatatgc
aaaatgacagatgtatttgaaggaagcatcattcgatgcatgaggaggctagaagagttg
cttcgacaaatgtgccaggcagcaaaggccattggaaacacagaactggagaacaaattt
gcagaaggcatcaccaaaatcaagagagacattgtatttgctgcaagcctttacctataa
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