Anolis carolinensis (green anole): 100559102
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Entry
100559102 CDS
T01608
Symbol
upf3b
Name
(RefSeq) UPF3 regulator of nonsense transcripts homolog B (yeast)
KO
K14328
regulator of nonsense transcripts 3
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03013
Nucleocytoplasmic transport
acs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100559102 (upf3b)
03015 mRNA surveillance pathway
100559102 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acs03019
]
100559102 (upf3b)
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100559102 (upf3b)
mRNA cycle factors
P-body specific factors
100559102 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
100559102
NCBI-ProteinID:
XP_008121808
Ensembl:
ENSACAG00000003625
LinkDB
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Position
Un
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AA seq
472 aa
AA seq
DB search
MKEGKENARPKEKRMAVGGGADAKAGGEPDRPGDRPRDKKELLSKVVIRRLPPSLTKEQL
EEHLQPLPEHDYFEFFANDTSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGLEY
PAIVEFAPFQKAAKKKSKKKDAKAGTIDDDPEYKKFLESYSADDEKLTSTPETLLEEIEA
KNKELIAKKTTPLLNFLKNKQRIREEKREERRRREIERKRQREEERRKWKEEERRKRKEA
EKTKKVERCPEKERDRSKDEPKIKLLKKPEKDERDFDKKEKAKRLERESLREDKAASPSV
GSVQAKRTDGEAKEEKAKKLVFSSQLEDDYGKDYREREYDRDREYERIQRDKFRRQDDER
RRQKDRFEKERVFRRKDDEVKKERDSLREKGKRAELSDYMGNAEKASKEDKKEEMAKRDR
IRNKDRPAMQLYQPGARSRSRLSAYDESPAKSPDQGAEKKPECEAGNAKEAE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaggcaaggagaacgcgaggcccaaggagaagcggatggcggtgggcggcggc
gcggacgccaaggccggaggagagcccgacaggcccggagacaggccccgcgacaagaag
gagctcctcagcaaggtggtgattcgacgcctccctcccagcttaactaaggagcagctt
gaagaacatctccagcctttgccagaacacgactattttgagttctttgctaacgacacc
agtttgtaccctcacatgttttccagagcatacatcaactttaaaaaccaagaagacata
gttctgttcagggatcgctttgatggttatgtttttgttgatcacaaaggtctggaatat
cctgccatagtggaatttgcaccatttcaaaaggctgccaaaaaaaagagtaagaaaaag
gacgccaaagccgggaccattgacgatgatccagagtacaagaagttcttagaaagctac
agtgccgacgatgagaaattaacatccacccctgagacgttactagaagaaatagaggca
aaaaacaaagaattaatagccaaaaagacaactcctctgctgaacttcttgaagaataaa
cagaggattagagaagaaaaacgagaggagaggaggaggagagaaatagagaggaaacga
caaagggaagaagaacgaaggaaatggaaggaagaggagaggaggaaaaggaaagaagcg
gaaaaaaccaaaaaagtggagaggtgtccagagaaagaaagggacagatccaaggacgag
ccgaaaattaagctacttaagaagccggaaaaagatgaaagagactttgacaaaaaggaa
aaggccaagaggctggagagagagagcctgcgagaggacaaggcggccagcccaagcgtt
ggcagcgtccaggccaagcgcaccgatggcgaggccaaagaggaaaaggccaagaaattg
gtgttttcttcccagttggaggacgactatgggaaagactacagggagagagaatacgac
cgggacagagagtacgagcggatccagcgagataaatttcggcggcaagacgacgagcgg
cggaggcagaaagaccgctttgagaaagagagggttttcaggagaaaagacgacgaggtg
aaaaaggagagagactccttgcgagagaaagggaaaagggccgaattgtccgactacatg
ggcaatgcagagaaggcctccaaagaggacaagaaggaagagatggccaagagggaccgc
attcgaaacaaggatcggccagctatgcaactctatcagcccggagcacggagccggagc
cggctgtcggcgtacgacgaaagccccgcgaagtcccccgaccaaggagccgagaagaag
cccgagtgcgaggccggcaacgcgaaggaggccgagtga
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