KEGG   Anolis carolinensis (green anole): 100560496
Entry
100560496         CDS       T01608                                 
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
acs  Anolis carolinensis (green anole)
Pathway
acs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100560496
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acs03019]
    100560496
Messenger RNA biogenesis [BR:acs03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     100560496
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     100560496
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 100560496
NCBI-ProteinID: XP_003230585
Ensembl: ENSACAG00000023898
LinkDB
Position
Un
AA seq 335 aa
MRQEDRAYAATEYGVRSHTSLEDAAKTASGQTGGVLRLRSVSRLTMASVVLCQAEKVYII
HGVQEDLRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILVGVKAEMGVPKLDRPN
EGFLEFFVDCSANATPEFEGRGGEELGTEIANTLYRIFDNESSVDLKLLCISPREHCWVL
YVDVLLLECGGNLFDAISIAVKAALFNTRIPKVRVLDDEGGREIELSDDPYDCIRLNVDN
VPCIVTLSKIGYRHVVDATLQEEACSLASLLISVTSRGAMTCMKKVGRGSLDPESIFEMM
ETGKRVGKLLHTSLQTILEKEESLGTSRKKVGFLG
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgaggcaagaagatcgcgcctacgcagcaacagagtacggggttcgaagccatacgtca
ttagaagacgcggcgaaaacagcaagcgggcagactgggggcgttctgaggctgcgcagt
gtttctcgtctcactatggcttccgtggtgctgtgccaagcggagaaagtgtacattatt
cacggcgtccaggaggatcttcgagttgatggccgtggctgtgaagattatagatgtatt
gaagtggaaacagatgtagtatctaacacaagtggatctgctagagttaaacttggtcac
acagacatcctagttggagtcaaagcagaaatgggagtaccaaagttggatagaccaaat
gaaggcttcctggaattctttgttgactgttccgccaatgctactccagaatttgaaggc
cggggtggagaggagctgggcactgaaattgcaaacaccctctacagaatatttgacaat
gaaagcagtgtcgatttgaagttgctttgtattagtcccagagagcactgctgggtgctt
tatgttgatgtcttgctattggaatgtggtggcaacttgtttgatgccatttcaattgca
gtaaaagcagctctatttaataccaggatacccaaagtgcgtgttttggatgatgaagga
ggacgggaaattgagctctctgatgatccctatgactgtattcggcttaatgtagacaat
gtcccctgcattgtaacactgagcaaaattggttataggcatgtagtggatgccaccctt
caggaggaagcatgttccttggctagcctcctcatttctgtgaccagtagaggtgccatg
acctgtatgaaaaaagttggaagagggagccttgatccagaaagcatatttgaaatgatg
gagactggaaaacgagtcggcaaattattacatacatctttgcaaactatcttagaaaaa
gaagaaagtcttggaacatcacggaaaaaggttggattcctgggatga

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