Anolis carolinensis (green anole): 100560496
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Entry
100560496 CDS
T01608
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100560496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acs03019
]
100560496
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100560496
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
100560496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
100560496
NCBI-ProteinID:
XP_003230585
Ensembl:
ENSACAG00000023898
LinkDB
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Position
Un
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AA seq
335 aa
AA seq
DB search
MRQEDRAYAATEYGVRSHTSLEDAAKTASGQTGGVLRLRSVSRLTMASVVLCQAEKVYII
HGVQEDLRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILVGVKAEMGVPKLDRPN
EGFLEFFVDCSANATPEFEGRGGEELGTEIANTLYRIFDNESSVDLKLLCISPREHCWVL
YVDVLLLECGGNLFDAISIAVKAALFNTRIPKVRVLDDEGGREIELSDDPYDCIRLNVDN
VPCIVTLSKIGYRHVVDATLQEEACSLASLLISVTSRGAMTCMKKVGRGSLDPESIFEMM
ETGKRVGKLLHTSLQTILEKEESLGTSRKKVGFLG
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaggcaagaagatcgcgcctacgcagcaacagagtacggggttcgaagccatacgtca
ttagaagacgcggcgaaaacagcaagcgggcagactgggggcgttctgaggctgcgcagt
gtttctcgtctcactatggcttccgtggtgctgtgccaagcggagaaagtgtacattatt
cacggcgtccaggaggatcttcgagttgatggccgtggctgtgaagattatagatgtatt
gaagtggaaacagatgtagtatctaacacaagtggatctgctagagttaaacttggtcac
acagacatcctagttggagtcaaagcagaaatgggagtaccaaagttggatagaccaaat
gaaggcttcctggaattctttgttgactgttccgccaatgctactccagaatttgaaggc
cggggtggagaggagctgggcactgaaattgcaaacaccctctacagaatatttgacaat
gaaagcagtgtcgatttgaagttgctttgtattagtcccagagagcactgctgggtgctt
tatgttgatgtcttgctattggaatgtggtggcaacttgtttgatgccatttcaattgca
gtaaaagcagctctatttaataccaggatacccaaagtgcgtgttttggatgatgaagga
ggacgggaaattgagctctctgatgatccctatgactgtattcggcttaatgtagacaat
gtcccctgcattgtaacactgagcaaaattggttataggcatgtagtggatgccaccctt
caggaggaagcatgttccttggctagcctcctcatttctgtgaccagtagaggtgccatg
acctgtatgaaaaaagttggaagagggagccttgatccagaaagcatatttgaaatgatg
gagactggaaaacgagtcggcaaattattacatacatctttgcaaactatcttagaaaaa
gaagaaagtcttggaacatcacggaaaaaggttggattcctgggatga
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