Anolis carolinensis (green anole): 100562142 Help Entry 100562142         CDS       T01608                                  Symbol xrn1 Name (RefSeq) 5'-3' exoribonuclease 1   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism acs  Anolis carolinensis (green anole) Pathway acs03008   Ribosome biogenesis in eukaryotes acs03018   RNA degradation Brite KEGG Orthology (KO) [BR:acs00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     100562142 (xrn1)   09123 Folding, sorting and degradation    03018 RNA degradation     100562142 (xrn1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:acs03019]     100562142 (xrn1)    03009 Ribosome biogenesis [BR:acs03009]     100562142 (xrn1)    03016 Transfer RNA biogenesis [BR:acs03016]     100562142 (xrn1)    03036 Chromosome and associated proteins [BR:acs03036]     100562142 (xrn1) Messenger RNA biogenesis [BR:acs03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      100562142 (xrn1)   mRNA degradation factors    5'-3' decay     5' exonucleases      100562142 (xrn1) Ribosome biogenesis [BR:acs03009]  Eukaryotic type   Pre-60S particles    RNases     100562142 (xrn1) Transfer RNA biogenesis [BR:acs03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     100562142 (xrn1) Chromosome and associated proteins [BR:acs03036]  Eukaryotic type   Gene silencing    piRNA pathway     100562142 (xrn1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer Motif Other DBs NCBI-GeneID:  100562142 NCBI-ProteinID:  XP_008104415 Ensembl:  ENSACAG00000004985 UniProt:  G1KDG4 LinkDB All DBs Position 3:21894687..21945111 Genome browser AA seq 1769 aa AA seqDB search MGVPKFYRWISERYPCLSQVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTVYLSGHETPGEGEHK IMEFIRSEKTKPDHDPNTRHCLYGLDADLIILGLTSHEPHFSLLREEVRFGGKKSQRVCA PEETTFHLLHLSLMREYIDYEFSPVKTKIKFPYEIEKIIDDWILMGFLVGNDFIPHLPHL HINHDALPMLYRTYMAVLPELEGYINEKGHLNLPRFEKYLAKLSDFDREHFSEIFVDLKW FESKVGNKYLNEAAGKAAEESKQHKKHKVQENSLYLAALEKPDGGNGVILKTTLEDEPEE DDLFETEFRQYKRAYYMTKMGVEVVSDDFLADQAKCYVQAIQWILHYYYHGVQSWSWYYP YHYAPYLSDIRKIGDLKIYLDLEKPFMPFEQLLAVLPAASKDLLPKCYQHLMTSEDSPII DYYPTEFKTDLNGKQQEWEAVVLIPFIDEKQLLEAMEPCNKLLTTEERQRNRHSECIMYL HDKDIDFQYLSPWPEKFPSIEHCHTRYKILSLDAWLVDIAHNEITKLDLEKVYFCGFPTL KHIPHKFYLKKYGVQVFQQSSHGENMLLEIMVREDSEELNIENIASSVLGKSVFVNWPHL EEARVVVVSDGETKFSLEEPPGTQKLYMGNAVPPTKITYAGDKEQNLWKKDIQGISEHYQ KRKGIIINETSAIVYAQLLTGRRYQLNQSGEVYLEKQWSKQVLPFAYQTVVKDIKAFDSR FSKLKTLDDLFPLGCTVFMLGVPYYGCTGEVQDSSDVISEGRIRVLFNIPCEPQLEILIQ NQHKYSVKYNPGYVLASRLGISGYLVSRFTGSIFIGRGSKKNSHGDHKANVGLNLKFNKK NEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFSYVAKNGQEDIFYEDDIWPGEEEN GAEKVQEIIAWLKAHPVSTLSRSSCDLHILDAAIVEKIEEEIEKCKQRKSNKKVRVTVKP HLLYRSLEQQHGIIPDRDADYRLFDRVVNVRENFSVPLGLRGTIIGIKGASRESDVLYEV LFDEEFHGGLTIRSSPARGYRMPSSALINLSYGNRSETGNQKLTAIVKPQPAVSPYSSYS PESFSVSSQKAHLGGLNHSPRSLFVPTRQLNGRQHNSLKVENQGDSGSLQKGAYLGGNEK YKNKQDDEFCSIWQTLQSSGKPHPTQQNRHEKGGMLPQSIKLNTSGQCKPGFNESSFRGH QRKQELFKKSKEESKDPRNEGQTHKISNKQNVAGANKYVKLLKRNESTNIPVEQKLDVGG PSKTEKNGSELEDILASLKIFKEKEVKSSYSEEPTNEEHLSPQSFAMKGTQMLKEILKID ASDTTEGKTAMKEVSAAPSRQDSYGSASQHRHPKKMAAFMSKSPSTGGFPNTQGMETGGH PPLGPPNPLSTPVSELSRLCSLFGMLPPEFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSE NEAKENAALFALQQLSTVGMNYPLPPAAHVFPNYAPVGALVPPGSIPPVFTQHSANMFPS PAHAFGSMPWGTPLPVHGKPYYASPYPGNMPLMTGIAIETHNQFIPLQVTKKRAANKMNS ESKEFPVSPQDPQLKNEHLVSDTTKLHLQDGFSDSLRSPTQTALSGMSFQEKIASSNTVA SRKKSTPNVSTKRKPRKLAVNFGVPKPSE NT seq 5310 nt NT seq  +upstreamnt  +downstreamnt atgggagtgccgaagttttaccgatggatctcggagcgatatccctgcctcagccaggtg gtgaaggagcaccagattccagaatttgataacttgtacctggacatgaacggtatcatt catcagtgttcacatcctaatgatgatgatgttcacttcagaatttctgaagataaaata tttgctgacatatttcactatttggaagtattgtttcgcattattaaaccacggaaggtt ttcttcatggcagtcgatggagtagctccaagagcaaaaatgaaccagcagcgtgggagg cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcattggaaaaaggagaa actcttcctacagaagccagatttgattccaattgtattaccccagggactgaattcatg gccaggttacatgaacacctgaagtattttgtaaatatgaagatatctacagacaaatcc tggcaaggcgtgactgtttacttatcgggccatgagacaccaggagaaggggaacataaa attatggagtttatcagatctgagaagacaaaacccgaccatgatccgaacacaagacat tgtctgtatgggttagatgctgacctgattattcttggactaacaagtcatgagccacat ttctcgcttttaagagaagaggtccgatttggtggcaaaaagtcacaaagagtatgtgct ccagaagaaaccactttccatctgctgcacttatcattaatgagagaatatattgactat gaattttccccagttaaaaccaagattaaattcccctatgaaattgaaaagataatagat gactggatcttaatgggatttctagttggaaatgattttatccctcatctacctcatttg cacattaaccatgatgcactgccaatgctttatagaacatacatggctgtattgcctgaa ctcgaaggttacattaatgaaaaggggcacctcaacttgccacgctttgagaaatatctt gcaaaactgtctgattttgaccgtgagcacttcagtgaaatctttgtagatttaaagtgg tttgaaagcaaagtgggcaataaatatctgaatgaggcagctggtaaggcagctgaagaa tcaaaacaacataagaaacacaaggttcaggaaaattccttatatttggcagctttagag aaaccagatggtgggaatggagtcattttgaaaactactttagaagatgaaccagaagag gatgatttgtttgaaacagagtttagacaatacaaaagagcctactatatgacaaagatg ggtgtggaagtagtttcagatgactttctggcagaccaggcgaagtgttatgttcaggca atacaatggattttgcattactactaccatggagttcagtcatggagctggtactatccc taccattatgcaccttatctctctgatattcgcaaaataggcgacctgaagatttatttg gatttagagaaaccgttcatgccatttgaacaacttcttgcagtattgccagcagctagc aaggatttacttccaaaatgctaccagcatttgatgaccagtgaagattctcccattatt gattattatccaacagaatttaaaacagatttgaatgggaagcaacaagaatgggaagct gtggtattaattccattcattgatgagaaacaattgttagaggcaatggaaccttgcaac aagttattgacaacagaagaaagacaaagaaataggcacagtgaatgcataatgtactta catgataaagatatagatttccagtacctttcaccatggccagagaagttcccttccata gaacactgccataccaggtataaaatcttatccttggatgcttggcttgtagatatagcc cataatgaaataaccaaattggatttggagaaggtgtatttctgtggttttcctactctg aagcacattccccataagttctatcttaagaaatatggggtccaagtctttcagcagagc agccatggagaaaatatgcttttggaaattatggttagagaagattcagaggaactgaac atagaaaatatagccagttcagtgcttggcaaatctgtctttgttaactggccacaccta gaagaagccagagttgttgttgtatcagatggtgaaacaaagtttagtttagaggagcct cctggaacacagaagctctacatgggaaatgctgtgccaccaactaaaataacatatgct ggagataaagaacagaatttatggaagaaagatatccagggaatttcagaacactaccaa aaaaggaaaggaattatcattaacgaaacatctgccattgtatatgctcagttacttact ggacgtagataccaattgaatcaaagtggtgaagtgtacttggagaagcaatggtccaag caggttctgccttttgcataccaaacagttgtcaaggatataaaagcttttgattcccgc ttttccaagttgaaaactttggatgatcttttccctcttggatgtacagtcttcatgctg ggagtaccttactatggctgcacaggagaagttcaggattcttcagatgtcatctcagag ggtcgaatccgtgttcttttcaacattccatgtgaacctcagttagaaatcttgatacag aatcaacataaatattcagtgaagtacaatcccggatatgtgttggccagccgtcttgga ataagtggctaccttgtatcaaggtttacaggaagcatatttattggaagaggatcaaag aaaaattcacatggagatcacaaagcaaatgtgggattgaacttaaagttcaataaaaag aatgaagaagtccctggttataccaaaaaagttggaaatgagtggatgtattcctctgca gtggaacagcttcttgctgaatatttggaaagggttccagaactttttagttacgtagct aaaaacggtcaagaagatatattctatgaagatgacatttggcctggagaagaagagaat ggtgctgagaaagttcaagaaatcattgcatggctgaaggctcatcctgttagtaccctg tcacgttcttcttgtgatttacacattctggatgctgctattgttgaaaagattgaagaa gaaatagaaaagtgcaagcaaagaaaaagtaataagaaagtgcgtgtgacagtgaaacct catttgttatacagatctttagaacaacagcatggaattataccagaccgtgatgcagat tatcgtctctttgaccgtgttgttaatgtgagagagaacttttcagttccccttggactt cgtgggaccattataggaattaaaggagccagcagagaatctgatgtactgtatgaagtc ctgtttgatgaagagtttcatggcggattgacaataaggagctcacctgccagaggttat cgcatgccatcaagtgccttaattaacctttcttatggcaatcggtctgaaacaggaaat cagaagctaactgccatagtcaaacctcagccagctgtgagtccctacagctcatattca cctgaatcattttctgtatcttcacaaaaagcacatctaggaggtctgaatcattcccct cgttccctctttgttccaactcgacaactgaatggaaggcagcacaacagtctcaaggtt gaaaaccagggcgattctggatccctccagaaaggagcatatttaggtggcaatgaaaaa tataaaaataaacaagatgatgaattttgcagcatttggcaaactttgcagagctctggg aagcctcaccctactcaacaaaataggcacgaaaagggtggaatgttacctcagtctata aagctaaataccagtggccaatgcaaaccaggctttaatgaaagtagcttcagaggccac cagagaaaacaagaattgtttaagaaatccaaagaagaatctaaagatccaagaaatgaa ggtcaaacccataaaatatcaaataaacagaatgttgcaggtgctaacaagtatgtgaag cttttgaagaggaatgaaagtacaaatatcccagtagaacaaaagttggatgttggtggt cccagtaaaacagagaagaatggatctgaacttgaagacatcttggcatctttgaaaata ttcaaagaaaaggaagtaaaatcatcttactctgaggagccaacaaatgaagagcacttg tctccacagtcttttgctatgaaagggacacaaatgctcaaagaaattttgaagatagat gcttctgatacaactgaagggaagactgcaatgaaagaagtttctgctgctcctagtaga caagattcttacggatctgcctcgcaacataggcatccaaaaaagatggccgctttcatg agcaaatcgcccagcacaggagggtttccaaacactcaaggcatggaaactggaggccac cctcctcttggaccaccgaacccattgtccacgccagtatctgagctgtctcgcctttgt tctctttttggaatgctgcccccagagttttcattccttagaaccccacagacaatgaca gtttgtcaagtaaaattgtcaaacggcttattagtacatggacctcagtgccattctgaa aacgaagccaaggagaatgctgcattgtttgctttacaacagttgagcactgttgggatg aactatccactgccaccagcagcacatgtatttccgaattatgcacctgttggagctctt gtgccacctggatctattcctccagtcttcacccagcacagtgctaatatgttcccttca ccagctcatgcatttggctccatgccatggggaactccactgcccgttcatggcaaacct tattatgccagtccgtatcctggaaacatgcctttaatgactggtatagcaattgaaaca cacaaccagtttatacctttgcaggtaactaaaaaaagggctgcaaacaagatgaactct gaatccaaggagttcccagtttctcctcaagacccacagttaaagaatgagcatctagta tctgacaccacaaaactgcatctccaggatggtttttcagattctttaagatctccgacg caaactgctctgtcagggatgtcatttcaagagaaaattgcttcttcaaacacagttgca tctcgtaaaaaatcaacaccaaatgtttctaccaagagaaagccaagaaaattagctgtg aattttggtgtacccaaaccttcagaataa

DBGET integrated database retrieval system